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Report for CCDS50439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50439.1 Public Mus musculus 19 Marveld1 23 108 98 CCDS HistoryNCBI Gene:277010Re-query CCDS DB by CCDS ID:50439.1Re-query CCDS DB by GeneID:277010See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 50439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061111.9 ENSMUSP00000053733.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061111.9Link to Ensembl Protein Viewer:ENSMUSP00000053733.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061111Re-query CCDS DB by Protein ID:ENSMUSP00000053733
Original member NCBI NM_183195.2 NP_899018.1 Updated not alive Link to Nucleotide Sequence:NM_183195.2Link to Protein Sequence:NP_899018.1Re-query CCDS DB by Nucleotide ID:NM_183195Re-query CCDS DB by Protein ID:NP_899018
Current member NCBI NM_183195.3 NP_899018.1 Accepted alive Link to Nucleotide Sequence:NM_183195.3Link to Protein Sequence:NP_899018.1Re-query CCDS DB by Nucleotide ID:NM_183195Re-query CCDS DB by Protein ID:NP_899018Link to BLAST:NP_899018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899018.1 173 Q7TQJ1 173 100% 0 0

Chromosomal Locations for CCDS 50439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42147649 42148170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGCTCCCGCCGCCCCCGCGCCAGCCGCCGCCCCAGGCGCGCACGGCCCGCGGCTCCCTGCGCCTGCAGC
GGGCTTTCCTGCGCGGCCCGCTGGGCGTGCTGCGGCTGCTGCAGCTGCTGGCCGGAGCCGCCTTCTGGAT
CACCATTGCCACCAGCAAGTACCAGGGCCCGGTGCACTTCGCGCTCTTCGTGTCCGTGCTCTTCTGGCTG
CTCACCCTGGGGCTCTACTTCATCACGCTGTTGGGCAAGCAGGAGCTGGTGCCCGTGCTGGGCTCGCGCT
GGCTCGTGGTCAACGTGGCGCACGACCTGCTGGCGGCTGCTCTCTACGGGGCGGCGACGGGCATCATGAT
CGACCAGACGCAGCGCCACAGCTACTGCAACCTCAAGAACTACCGGCTGCCCTGCGCCTACCATGCCTTC
CTGGCGGCCTCTGTCTGCGGCGGCCTCTGCCTCGGCCTCTACCTACTCTCGGCACTCTACGGCTGCTGCC
GTCGCTACCAGGGCAAGGAGGAGGTGGTGTGA

Translation (173 aa):
MLPPPPRQPPPQARTARGSLRLQRAFLRGPLGVLRLLQLLAGAAFWITIATSKYQGPVHFALFVSVLFWL
LTLGLYFITLLGKQELVPVLGSRWLVVNVAHDLLAAALYGAATGIMIDQTQRHSYCNLKNYRLPCAYHAF
LAASVCGGLCLGLYLLSALYGCCRRYQGKEEVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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