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Report for CCDS50513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50513.1 Public Mus musculus 2 Abi1 23 108 98 CCDS HistoryNCBI Gene:11308Re-query CCDS DB by CCDS ID:50513.1Re-query CCDS DB by GeneID:11308See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140164.7 ENSMUSP00000120462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140164.7Link to Ensembl Protein Viewer:ENSMUSP00000120462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140164Re-query CCDS DB by Protein ID:ENSMUSP00000120462
Original member NCBI NM_007380.4 NP_031406.2 Updated not alive Link to Nucleotide Sequence:NM_007380.4Link to Protein Sequence:NP_031406.2Re-query CCDS DB by Nucleotide ID:NM_007380Re-query CCDS DB by Protein ID:NP_031406
Current member NCBI NM_007380.5 NP_031406.2 Accepted alive Link to Nucleotide Sequence:NM_007380.5Link to Protein Sequence:NP_031406.2Re-query CCDS DB by Nucleotide ID:NM_007380Re-query CCDS DB by Protein ID:NP_031406Link to BLAST:NP_031406.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031406.2 475 Q8CBW3-4 475 100% 0 0

Chromosomal Locations for CCDS 50513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 22941872 22942047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22946576 22946761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22950184 22950270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22953435 22953608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22957018 22957118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22960707 22960847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22962401 22962501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22971083 22971259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22994523 22994690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23039949 23040065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACC
AGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTATATACAGGCTACAGACAAGAGAAAAGCTCT
AGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAAC
AATGTGCTCCAGCTGCTGGATATCCAAGCATCTCAGCTGCGGAGGATGGAGTCATCCATCAATCACATCT
CACAGACTGTGGATATTCATAAAGAAAAAGTGGCTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAA
TACATCAAGAACTCACAAAATAATCGCACCCGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCT
ATCGACTATACAGTTCTGGATGATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTG
GCACATTGTCGAGAACAAACCCTCCCACGCAGAAACCACCAAGCCCTCCCGTGTCGGGCCGAGGGACTTT
GGGACGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCAACAGTTCCCAATGACTACATGACT
AGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACAGCTTCTTTAAATCAGAGACCAAGGACGC
ATAGTGGAAGTAGTGGAGGAAGCGGAAGCCGAGAGAACAGTGGGAGCAGCAGCATTGGCATTCCTATTGC
TGTGCCTACGCCCTCACCGCCCACTGCGGGCCCAGCCCCTGGCGCAGCTCCTGGTTCCCAGTATGGCACA
ATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACATCTTCTGGTGGATATAGACGAACTC
CTTCTGTGGCCGCCCAATTCTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAAAATTCAAT
TTCTGTTGCCCCTCCTCCTCCCCCCATGCCTCAGTTGACTCCACAGATCCCTCTCACAGGCTTCGTGGCC
AGGGTGCAGGAAAACATTGCTGATAGCCCAACTCCACCACCACCCCCTCCACCAGATGACATTCCCATGT
TTGATGACTCTCCGCCTCCTCCGCCACCTCCTCCTGTGGACTATGAAGATGAGGAAGCTGCAGTAGTTCA
GTATAGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCA
ATATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTTATAA
AGAAGAATGATGATGGCTGGTTTGAAGGAGTTTGCAATCGAGTGACTGGACTCTTCCCTGGGAACTATGT
TGAATCAATCATGCACTATACTGATTAG

Translation (475 aa):
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQINALAN
NVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKP
IDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMT
SPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTAGPAPGAAPGSQYGT
MTRQISRHNSTTSSTSSGGYRRTPSVAAQFSAQPHVNGGPLYSQNSISVAPPPPPMPQLTPQIPLTGFVA
RVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVA
IYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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