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Report for CCDS50524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50524.1 Public Mus musculus 2 Noxa1 23 108 98 CCDS HistoryNCBI Gene:241275Re-query CCDS DB by CCDS ID:50524.1Re-query CCDS DB by GeneID:241275See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114373.7 ENSMUSP00000110014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114373.7Link to Ensembl Protein Viewer:ENSMUSP00000110014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114373Re-query CCDS DB by Protein ID:ENSMUSP00000110014
Original member Current member NCBI NM_001163626.1 NP_001157098.1 Accepted alive Link to Nucleotide Sequence:NM_001163626.1Link to Protein Sequence:NP_001157098.1Re-query CCDS DB by Nucleotide ID:NM_001163626Re-query CCDS DB by Protein ID:NP_001157098Link to BLAST:NP_001157098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157098.1 436 Q8CJ00-2 436 100% 0 0

Chromosomal Locations for CCDS 50524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25085724 25085854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25085973 25086087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25086186 25086300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25086620 25086774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25086939 25087027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25087154 25087199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25089174 25089221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25090170 25090277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25090492 25090626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25091721 25091829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25092542 25092624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25094748 25094924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGCTCTCTAGGGGATCAGATACGGGACTGGCACCGGGGTGTGCTGGCCGTGGCACGCGAAGACTGGG
ACTCTGCGCTGTGCTTCTTCTCAGATGTCCGAGAGCCGCTGGCTAGGATGTACTTTAACAGGGGCTGTGT
GCATCTGATGGCAGGGGATCCCGAGGCTGCGCTGCGGGCATTTGACCAAGCAGTGACTAAGGACACCTGC
ATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAGGTTCCAGGAGGCTGTGTCTG
ACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTT
CAAATTGCAAGCCTGGGAGGTCCTATACAACATGGCATCAGCACAGTGCCAGGCAGGGCTCTGGACCAAG
GCTGCCAATACTCTAGTGGAGGCAATCTCCAAATGGCCAGAGGGGGCTCAAGACATCCTGGACATTGCCA
TGGACAAAGTGCAGAAACAGGTACCCCTACAGCTACAGCAAGTGCCCAAGGGTGAGGTCTTCCAGCCTCC
CAGGCGATACCTAAAACATCTGGAGCCCATGGATTTCCTTGGCAAGGCTAAGGTGGTGGCTTCTGTCATT
CCTGATGACCACAACGCCCAGCCTCAGCAGAGGTCCCAGGCGGAGCATGCTGGCCACCAGCCATCCTCAT
CTATGTGTGGTCACACGAGCCCTGGCCTATATGATAGTTTGCTGGCATCCAGAAGGCCTGGTCCAGGCCC
CTCTGAAGTTTCCTCAGGATCTGAGGGAGCAGCTACAAAGGACCCTGAATCCTTGGTGACTGTCACTGTG
CAGTGCCACTTTACTGTGCCCCTGAAGGTCCCAAGAGGAACTGGCCTGTCCAGTTTTCAGACACTACTAG
CTCAAGCCCTCCTTCACCAGACGCAGACAGGGCAGCTCAGTTACAAAGCCCCAGGAGAGGAGAGATCCTG
GATTCCCATCTCCACGGAGGAGTCCCTGCAGAGTATATGGAGGAATGTGCCCGTGGGCCCAGGAGGGTTG
CAGCTCCAGTGCCAGGGGGTCTGGGGCCGGCCAGTCCTCTACCAAGTAGTAGCTCAGTACAACTATCGTG
CCCAAAGACCGGAGGATTTGGACTTCCACCAAGGGGACACGGTGGATGTCCTGTGTGAAGTGGACGAAGC
ATGGCTGGAGGGACACCGAGATGGCTGCGTTGGCATTTTCCCTAAGTGCTTTGTGGTCCCAGCTGGCGCC
TATGTGGAAGCCATGCTTGTACTGGGACCCCAGCCAGGAGACCAGAACTAG

Translation (436 aa):
MSSLGDQIRDWHRGVLAVAREDWDSALCFFSDVREPLARMYFNRGCVHLMAGDPEAALRAFDQAVTKDTC
MAVGFLQRGVANFQLQRFQEAVSDFQLALAQLRDNAVIDYTQLGLNFKLQAWEVLYNMASAQCQAGLWTK
AANTLVEAISKWPEGAQDILDIAMDKVQKQVPLQLQQVPKGEVFQPPRRYLKHLEPMDFLGKAKVVASVI
PDDHNAQPQQRSQAEHAGHQPSSSMCGHTSPGLYDSLLASRRPGPGPSEVSSGSEGAATKDPESLVTVTV
QCHFTVPLKVPRGTGLSSFQTLLAQALLHQTQTGQLSYKAPGEERSWIPISTEESLQSIWRNVPVGPGGL
QLQCQGVWGRPVLYQVVAQYNYRAQRPEDLDFHQGDTVDVLCEVDEAWLEGHRDGCVGIFPKCFVVPAGA
YVEAMLVLGPQPGDQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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