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Report for CCDS50540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50540.1 Public Mus musculus 2 Entr1 23 108 98 CCDS HistoryNCBI Gene:68112Re-query CCDS DB by CCDS ID:50540.1Re-query CCDS DB by GeneID:68112See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077983.12 ENSMUSP00000077133.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077983.12Link to Ensembl Protein Viewer:ENSMUSP00000077133.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077983Re-query CCDS DB by Protein ID:ENSMUSP00000077133
Original member Current member NCBI NM_001085408.1 NP_001078877.1 Accepted alive Link to Nucleotide Sequence:NM_001085408.1Link to Protein Sequence:NP_001078877.1Re-query CCDS DB by Nucleotide ID:NM_001085408Re-query CCDS DB by Protein ID:NP_001078877Link to BLAST:NP_001078877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078877.1 359 A2AIW0-3 359 100% 0 0

Chromosomal Locations for CCDS 50540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26383598 26383694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26384682 26384821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385083 26385145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385498 26385609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385990 26386063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26386904 26387311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26387556 26387671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26389149 26389218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCTCTATCGCGGACGCGGAGCCTTGTGGTTCCCGACG
GTGACAAACTTGAAGACCTTGAAGAAGCCAATCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCT
CAGCCTGTCAAAAGAAGACACGACCACCAGCCGAATTTACCCAAAGGAAGCCTCAAGGCACCCACTGGGA
CTAGAGCACAGCTCCCCTGCCTCCCAGCTCATGGGATATGGCCTGGAATCTCAGCAGCCATTTTTTGAAG
ACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGATGATGGATGGAATATAACCTACTTGCCATCTGC
CGTGGATCAGACTCATTCCTCTAGAGACACACAGGACTCACCGCCCTGTGACACCTACCTTTCCTTTTTC
TCCAACTCGTCAGAGCTGGCATGTCCCGAGTCTTTGCCCCCATGGACGCTGAGTGACACCGACTCCAGGA
TCTCCCCAGCGTCTCCAGCTGGGAGTCCTAATGCAGACTTTGCAGCTCATGAAGAATCCCTAGGGGACAG
ACACCTGCGGACGCTGCAGATAAGTTATGAAGCACTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTA
AATGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAATGGTGAGGACACTCGAACGGAAGTTGGAGGCGA
AGATGATCAAGGAGGAGAGTGACTTCCATGACCTCGAGTCAGTAGTCCAGCAAGTCGAACAGAACCTTGA
ACTGATGACCAAACGGGCTGTAAAAGCAGAAAATCATGTCTTGAAGCTGAAACAGGAAATAAATTTGCTT
CAGGCCCAGCTCTCAAACTTGAGGCGAGAAAATGAAGCCCTGCGGTCAGGCCAGGGTGCCAGCCTTTCTG
TAGTGAAGCAGAACACCGACGTGGCCTTGCAGAACCTCCACCTTGTCATGAACAGTGCACACGCATCCAT
AAAGCAGCTGGTGTCTGGGGCAGACACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATCGACAGAATT
AGTGAAGTTAAAGATGAGGTGGACTCTTGA

Translation (359 aa):
MSGYARRQGAPPLSRTRSLVVPDGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTTTSRIYPKEASRHPLG
LEHSSPASQLMGYGLESQQPFFEDPTRASNLEEDEDDGWNITYLPSAVDQTHSSRDTQDSPPCDTYLSFF
SNSSELACPESLPPWTLSDTDSRISPASPAGSPNADFAAHEESLGDRHLRTLQISYEALKDENSKLRRKL
NEVQSFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVLKLKQEINLL
QAQLSNLRRENEALRSGQGASLSVVKQNTDVALQNLHLVMNSAHASIKQLVSGADTLNLVAEILKSIDRI
SEVKDEVDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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