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Report for CCDS50545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50545.1 Public Mus musculus 2 Mymk 23 108 98 CCDS HistoryNCBI Gene:66139Re-query CCDS DB by CCDS ID:50545.1Re-query CCDS DB by GeneID:66139See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163967.1 ENSMUSP00000128491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163967.1Link to Ensembl Protein Viewer:ENSMUSP00000128491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163967Re-query CCDS DB by Protein ID:ENSMUSP00000128491
Original member Current member NCBI NM_001159602.1 NP_001153074.1 Accepted alive Link to Nucleotide Sequence:NM_001159602.1Link to Protein Sequence:NP_001153074.1Re-query CCDS DB by Nucleotide ID:NM_001159602Re-query CCDS DB by Protein ID:NP_001153074Link to BLAST:NP_001153074.1

Chromosomal Locations for CCDS 50545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27062188 27062337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27062702 27062818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27066291 27066439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27067353 27067467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27067740 27067751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGGCAAAGGTTTCTCCCATGCCTGTGATGGGCCTGGTTTGTCTGTGCTGTGCTTCATGCGCCGTGACA
TTCTGGAGTACTTCAGCATCTATGGAACAGCCCTGAGCATGTGGGTCTCCCTGATGGCACTGGCCGACTT
TGATGAACCCCAGAGATCGACCTTCACAATGCTTGGCGTCCTTACCATCGCTGTGCGGACTTTTCATGAC
CGCTGGGGTTACGGGGTATACTCCGGTCCCATAGGCACGGCCACCCTCATCATTGCTGTAAAGTGGCTGA
AGAAGATGAAAGAGAAGAAGGGCCTGTACCCCGACAAGAGCATCTACACCCAGCAGATAGGCCCCGGCCT
GTGCTTTGGGGCCCTGGCCCTGATGCTTCGATTCTTCTTTGAGGAATGGGATTACACCTACGTCCACAGC
TTCTACCACTGTGCCCTGGCCATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACG
CAGGGGCCCCCGCCAAGCTGACCTTCTCCACCCTCTGCTGCACTTGTGTCTGA

Translation (180 aa):
MGKGFSHACDGPGLSVLCFMRRDILEYFSIYGTALSMWVSLMALADFDEPQRSTFTMLGVLTIAVRTFHD
RWGYGVYSGPIGTATLIIAVKWLKKMKEKKGLYPDKSIYTQQIGPGLCFGALALMLRFFFEEWDYTYVHS
FYHCALAMSFVLLLPKVNKKAGNAGAPAKLTFSTLCCTCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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