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Report for CCDS50587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50587.1 Public Mus musculus 2 Ccdc148 23 108 98 CCDS HistoryNCBI Gene:227933Re-query CCDS DB by CCDS ID:50587.1Re-query CCDS DB by GeneID:227933See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077687.5 ENSMUSP00000076871.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077687.5Link to Ensembl Protein Viewer:ENSMUSP00000076871.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077687Re-query CCDS DB by Protein ID:ENSMUSP00000076871
Original member NCBI NM_001001178.2 NP_001001178.1 Updated not alive Link to Nucleotide Sequence:NM_001001178.2Link to Protein Sequence:NP_001001178.1Re-query CCDS DB by Nucleotide ID:NM_001001178Re-query CCDS DB by Protein ID:NP_001001178
Current member NCBI NM_001001178.3 NP_001001178.1 Accepted alive Link to Nucleotide Sequence:NM_001001178.3Link to Protein Sequence:NP_001001178.1Re-query CCDS DB by Nucleotide ID:NM_001001178Re-query CCDS DB by Protein ID:NP_001001178Link to BLAST:NP_001001178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001178.1 527 Q6P5U8-1 527 100% 0 0

Chromosomal Locations for CCDS 50587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58823554 58823700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58827553 58827693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58829750 58829867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58906355 58906473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58934369 58934509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58980370 58980576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58982869 58983007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59001814 59001995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59002073 59002168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59003323 59003471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59003982 59004064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 59009082 59009143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAGATGTAAAT
TGGAGTCTGAAATAAGATCTTGTCTCAATGAGGAGAGCATTGGGAGTGAATGTTTTTGTGAGCTTATGAA
TTTTGAGAAAGAGCTGTCAGAAGAGTGGTGTGCGTACCTTACAGCTGTCATTGATCCTATTCAGCAGCTG
AGAACGGGCCTGAAGAGATGGTACCCCACTTCTCAGAGTGCACCCTGCCATGAGGGCTCAGACGCAACTG
AGGTTCTGGAAGAGGTTGACTTTGTCAAGAAACAATCCAAGGCTGCCTTTGAAAGACTTCATCAGGAGCA
ATGGCACTTAGAGGAAGACCTTTTGGACTTGAGTGTGAAGTTACTAGATCACTCTTCAGAAGAAAAACCT
AACTTGCTCAGCGAACAGCCCATGGAGTTAGTAACGTTGGACTGCCCATACCCAGATCTGAAATCGTCAA
TCCTTAACGAGTTCTGTAACTTTACAGAGAGATATCAAGAGAAACTTGAAGATTTTGATCTGCAATTAGA
AGACATACGCAGTAACTTCCAACTAAGTGCAGAAGAGCACTGGACTTACCAGGCTGTCTTAGACCAGTAT
CCCGGAAATCTCCTTGGCAGAAGAGCTCTGTACTTGGACATGTTGCAAAGATATTTCCCTCACAAGTCCA
GGCATCATTTGGTAGAACACGAGAAATACTGTGACCAGTATCACTTTGCTAGAGAGCAGAGAAGAATCCT
GATAGACAATTGGAGCAGGAGCAGGAAAGACTTTATACAGAAAGCCATGCTGACTCTCCTCGAAGCCTGT
GCAGCCCATGAAATGGGGAGCCTTCTGGCCAAGGACAGGAGACGGCAACAGGAACTATGTGCTGACCTGA
AAGCCAAGGTTTCTCAATGGCGAGCCCAACAAGAAGAGCTATCAAGACTGGAAATGGAAATTTCAGCCAG
AAGAAGAGAAAGGGAAGAAGAGAAAGAGAAATTGTGGAAAAAGAAGGAATTGCTACGAAGGGAGGAGACA
GAGATTAAGATAAGAAAATACTGGGCTATGAAACAGCAGAAGTGGCAAGAAATGGAAAAGAGAGATCTCC
GGCGTCTGGAAGAGCTGAAGAAGTTAATGGCAGAACAGTCAGTGAAAGACAGAGAAAGGGTTAAATATAG
ACAAGAATTGTTGGAGAAGCGTTTGATGGAGAGAAAAAAATTGGCCCTTCAAGAAGTCCAGGAAGAAGAA
GAGAGAGAAAGGCGGCTGGAAGCCCTACGAAAGCAGGTTGCTGTTGCTGTCCAGTCTGACCCAGTTAGAA
TGATGTCAGAGACACTGGCCTGGAAAGCAAGGACAGGCTCTGAAAGTGAGGAAGAATTCATCCTTCAAAA
GCCGCTCTTCACACTGACTACATACAACGAGCAACAGATAATTTCCGATCCTCGACTTCGATTTGAGTTA
GCACTTCGAGAAGCTGGACTCCATAAAACACAGTATGCCAAAGAGATGTTACCAAAAATTGGTCCTCAGA
AGCCTCCAAGGAAGGACACAGAATCGACCGTGTTCAAGGTCTAG

Translation (527 aa):
MLIKQHKQVWWQEQERLKGIRCKLESEIRSCLNEESIGSECFCELMNFEKELSEEWCAYLTAVIDPIQQL
RTGLKRWYPTSQSAPCHEGSDATEVLEEVDFVKKQSKAAFERLHQEQWHLEEDLLDLSVKLLDHSSEEKP
NLLSEQPMELVTLDCPYPDLKSSILNEFCNFTERYQEKLEDFDLQLEDIRSNFQLSAEEHWTYQAVLDQY
PGNLLGRRALYLDMLQRYFPHKSRHHLVEHEKYCDQYHFAREQRRILIDNWSRSRKDFIQKAMLTLLEAC
AAHEMGSLLAKDRRRQQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREET
EIKIRKYWAMKQQKWQEMEKRDLRRLEELKKLMAEQSVKDRERVKYRQELLEKRLMERKKLALQEVQEEE
ERERRLEALRKQVAVAVQSDPVRMMSETLAWKARTGSESEEEFILQKPLFTLTTYNEQQIISDPRLRFEL
ALREAGLHKTQYAKEMLPKIGPQKPPRKDTESTVFKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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