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Report for CCDS50608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50608.1 Public Mus musculus 2 Chn1 23 108 98 CCDS HistoryNCBI Gene:108699Re-query CCDS DB by CCDS ID:50608.1Re-query CCDS DB by GeneID:108699See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112024.9 ENSMUSP00000107655.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112024.9Link to Ensembl Protein Viewer:ENSMUSP00000107655.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112024Re-query CCDS DB by Protein ID:ENSMUSP00000107655
Original member Current member NCBI NM_001113246.2 NP_001106717.2 Accepted alive Link to Nucleotide Sequence:NM_001113246.2Link to Protein Sequence:NP_001106717.2Re-query CCDS DB by Nucleotide ID:NM_001113246Re-query CCDS DB by Protein ID:NP_001106717Link to BLAST:NP_001106717.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106717.2 459 Q91V57-1 459 100% 0 0

Chromosomal Locations for CCDS 50608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73613025 73613196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73614662 73614767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73617921 73618058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73624115 73624192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73624877 73625050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73631746 73631830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73659680 73659757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73679615 73679903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73706919 73707032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73710455 73710486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73716364 73716419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73721403 73721441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73775023 73775041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCTCTGACCCTGTTCGATACAGATGAATATAGACCTCCTGTTTGGAAATCTTACTTATACCAGCTGC
AGCAGGAAGCCCCTCACCCTCGAAGGGTCACCTGCACTTGTGAGGTAGAAAACAGACCAAAGTATTATGG
AAGAGAGTATCATGGCATGATCTCTAGAGAAGAGACTGACCAGCTCCTGAGTGTGGCTGAGGGGAGCTAC
CTCATCCGTGAGAGCCAGCGGCAGCCAGGAACGTACACTTTGGCTTTAAGATTTGGAAGTCAGACCAGAA
ACTTCAGGCTGTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGT
GACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAAC
CCAATTTATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAACAGCACATGGCAGTCC
TGAAAGAGACACATGATGAGAAAGAGGCTACAGGCCAGGATGGGGTATCAGAGAAAAGGTTGACATCACT
TGTTAGAAGAGCAACTCTGAAAGAAAATGAACAAATTCCAAAATATGAAAAGGTTCACAATTTCAAGGTG
CATACGTTCCGAGGGCCACACTGGTGTGAATACTGTGCCAACTTCATGTGGGGCCTCATTGCTCAGGGAG
TGAAATGTGCAGATTGTGGGTTGAATGTTCACAAGCAGTGTTCCAAGATGGTCCCCAATGACTGTAAGCC
AGATCTGAAGCACGTGAAGAAGGTGTACAGCTGTGACCTGACAACGCTCGTGAAAGCTCACATCACCAAG
CGGCCAATGGTGGTAGACATGTGCATCAGGGAGATCGAGTCCAGAGGTCTTAATTCTGAAGGACTCTACC
GAGTGTCAGGATTTAGTGACCTGATTGAAGATGTCAAGATGGCTTTTGATAGAGATGGTGAGAAGGCGGA
TATTTCTGTGAACATGTATGAGGACATCAACATTATCACTGGTGCACTTAAACTGTACTTCAGGGATCTG
CCAATTCCTCTCATCACATACGATGCCTACCCCAAGTTCATTGAGTCTGCCAAAATTATGGACCCTGACG
AGCAATTGGAGACCCTTCACGAAGCACTGAGATCGCTGCCGCCTGCCCACTGCGAGACGCTCCGGTACCT
CATGGCGCATCTCAAGAGAGTGACCCTTCATGAGAAGGAGAATCTGATGAGTGCAGAGAACCTTGGGATC
GTGTTTGGACCAACCCTCATGAGATCCCCAGAGCTCGACCCCATGGCCGCCCTGAACGACATACGCTATC
AGAGACTGGTGGTGGAGCTGCTTATCAAAAACGAAGACATTTTATTTTAG

Translation (459 aa):
MALTLFDTDEYRPPVWKSYLYQLQQEAPHPRRVTCTCEVENRPKYYGREYHGMISREETDQLLSVAEGSY
LIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDGLITLYIETKAAEYIAKMTIN
PIYEHIGYTTLNREPAYKQHMAVLKETHDEKEATGQDGVSEKRLTSLVRRATLKENEQIPKYEKVHNFKV
HTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITK
RPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDL
PIPLITYDAYPKFIESAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGI
VFGPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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