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Report for CCDS50659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50659.1 Public Mus musculus 2 Or4k42 23 108 98 CCDS HistoryNCBI Gene:257662Re-query CCDS DB by CCDS ID:50659.1Re-query CCDS DB by GeneID:257662See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099616.1 ENSMUSP00000097211.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099616.1Link to Ensembl Protein Viewer:ENSMUSP00000097211.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099616Re-query CCDS DB by Protein ID:ENSMUSP00000097211
Original member Current member EBI ENSMUST00000217611.1 ENSMUSP00000150388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217611.1Link to Ensembl Protein Viewer:ENSMUSP00000150388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217611Re-query CCDS DB by Protein ID:ENSMUSP00000150388
Original member Current member NCBI NM_001278787.1 NP_001265716.1 Accepted alive Link to Nucleotide Sequence:NM_001278787.1Link to Protein Sequence:NP_001265716.1Re-query CCDS DB by Nucleotide ID:NM_001278787Re-query CCDS DB by Protein ID:NP_001265716Link to BLAST:NP_001265716.1
Original member Current member NCBI NM_001278788.1 NP_001265717.1 Accepted alive Link to Nucleotide Sequence:NM_001278788.1Link to Protein Sequence:NP_001265717.1Re-query CCDS DB by Nucleotide ID:NM_001278788Re-query CCDS DB by Protein ID:NP_001265717Link to BLAST:NP_001265717.1
Original member Current member NCBI NM_146262.3 NP_666374.2 Accepted alive Link to Nucleotide Sequence:NM_146262.3Link to Protein Sequence:NP_666374.2Re-query CCDS DB by Nucleotide ID:NM_146262Re-query CCDS DB by Protein ID:NP_666374Link to BLAST:NP_666374.2

Chromosomal Locations for CCDS 50659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111489218 111490156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGATGAAGGCAATCACACTATGGTGTCAGAATTTATACTCTGGGGACTTTCCAGCTCACAGAGGATTG
AAGTCTTACTCTTCATGGTGTTTTCAATGCTTTATCTTCTCATTGTTTCTGGAAATATTGTCATTCTGGT
TTTAATCACCACTGACCCCCATCTGCATTCTCCCATGTACTTCTTGTTGGCCAACCTGTCCTTTATTGAT
ATGTGGCTTTCCTCAGTCACTACTCCTAAGATGATTACAGACTTTCTCAGAGAAAACAAGACCATTTCCT
TTGCAGGATGCATGTCCCAGGTCTTCTTTGCCCATTGTATTGCTGCAGGAGAGATGGTGCTGTTGGTGAT
AATGGCTTATGATCGCTATGTGGCCATCTGCAAACCACTCCACTACTTCACCATCATGAATATGAAGAGA
TGCACTGGGTTGGTGTTCACTTCCTGGACAACTGGATTTGTACATGCTCTTAGTCATTTGGTAGTGATTG
TGGAATTGCCTTTTTGTGGACCTAAGGAAATAGATAGCTTTTTCTGTGACATGCCATTGGTAATCAAGCT
AGCTTGCATAGATTCCCGTGACTTGGATGTTCTAATGAATGCTGATTGTGGACTTGTGGCTGTAACTTGC
TTTATTCTGTTGCTTATTTCCTACACATATATTCTTATCACCGTATGTCAGAGCTCTAAAGCTGGTGCAT
CTAAGGCAATGAACACATGCACTGCCCACATTACGGTGGTGCTGATCTTTTTTGTGCCCTGCATCTTCAT
CTATGTATGGCCTCTCAATATCACTTGGTTGGATAAATTTCTTGCTGTATTTTACTCTGTTTTTACACCT
CTCCTAAATCCAGCCATTTATACTCTGAGAAATAAAGAGATGAAAAATGCCATGAAAAGATTTATAAGTA
ACTACCTTAGTCACAAAGGAAATTTATAA

Translation (312 aa):
MDEGNHTMVSEFILWGLSSSQRIEVLLFMVFSMLYLLIVSGNIVILVLITTDPHLHSPMYFLLANLSFID
MWLSSVTTPKMITDFLRENKTISFAGCMSQVFFAHCIAAGEMVLLVIMAYDRYVAICKPLHYFTIMNMKR
CTGLVFTSWTTGFVHALSHLVVIVELPFCGPKEIDSFFCDMPLVIKLACIDSRDLDVLMNADCGLVAVTC
FILLLISYTYILITVCQSSKAGASKAMNTCTAHITVVLIFFVPCIFIYVWPLNITWLDKFLAVFYSVFTP
LLNPAIYTLRNKEMKNAMKRFISNYLSHKGNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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