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Report for CCDS50736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50736.1 Public Mus musculus 2 Cfap61 23 108 98 CCDS HistoryNCBI Gene:78774Re-query CCDS DB by CCDS ID:50736.1Re-query CCDS DB by GeneID:78774See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116398.7 ENSMUSP00000112099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116398.7Link to Ensembl Protein Viewer:ENSMUSP00000112099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116398Re-query CCDS DB by Protein ID:ENSMUSP00000112099
Original member Current member NCBI NM_175280.3 NP_780489.2 Accepted alive Link to Nucleotide Sequence:NM_175280.3Link to Protein Sequence:NP_780489.2Re-query CCDS DB by Nucleotide ID:NM_175280Re-query CCDS DB by Protein ID:NP_780489Link to BLAST:NP_780489.2

Chromosomal Locations for CCDS 50736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145939849 145939991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145947046 145947196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145949919 145949995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145950759 145950826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145951058 145951184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145963298 145963535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGTCCATCCTCACGTCCCCCAGAGGGAAGGTCGAGGTGGTACACTGCCGAAGAACAGAGTCCCAGGACA
TCTTCTGTATCAAAAACCTCGTTAGAAAGTTTACTCAGAAGCTGTTTGGGAGGCTCAACATAATCTATTT
GCTAGAAAAGGCAAACCTCGCTGTTACTGTCTGCAATGACAAGGAGGAGATCATGGCTCACTCCATCTTC
TTGGACTATCCCAACTGGAACGTCGCCAAGCAGGACAACTGGATCCCATTGTTCAGGGAACTCGACAAAG
AAATCCCATGCACACCTCTGAACACGCTGTTTATGCACTTCTTTGTGGCTGTGGATGAATATGCCACTGG
CTGCCTCAAAGAAATCATCCGGACTGTGTTCAAGGCGGTGCCAGAACTGTACTTCATATTCCTTATAGTG
CCAACATATTTGAGCCTAGGCTCAACTCTGATAACTGTGTTTGACCAAGTGGGGAACATTCCATGTCTGA
ACTATAATGAAGACTTTGCAGTGCACATATGTCACAGGCACAATCACTACCCTCAGCTGCATATTCGCAA
AGCCAGGGTAGAAGACCATGATGATCTCATGCCAATATTTATGCACTACGACAACACTCTAAAGGAAATT
TATGGTGAATACTTCTTGGCCGAACTGATCGAGGCCCAAGATAAAGACCATCATGCTGTGGTGTGTGAGG
TTGGTGACAGATCTTCCTGGGGACAGAGTGAAAGAAATGAGAGGAATGGGTCATGCTTCTTTGGCTTGCT
GAGCACCCGTGGAGCTGATGTGCCCAGCTGTTGA

Translation (267 aa):
MSILTSPRGKVEVVHCRRTESQDIFCIKNLVRKFTQKLFGRLNIIYLLEKANLAVTVCNDKEEIMAHSIF
LDYPNWNVAKQDNWIPLFRELDKEIPCTPLNTLFMHFFVAVDEYATGCLKEIIRTVFKAVPELYFIFLIV
PTYLSLGSTLITVFDQVGNIPCLNYNEDFAVHICHRHNHYPQLHIRKARVEDHDDLMPIFMHYDNTLKEI
YGEYFLAELIEAQDKDHHAVVCEVGDRSSWGQSERNERNGSCFFGLLSTRGADVPSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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