NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50749.1 Public Mus musculus 2 Slc52a3 23 108 98 CCDS HistoryNCBI Gene:69698Re-query CCDS DB by CCDS ID:50749.1Re-query CCDS DB by GeneID:69698See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109858.1 ENSMUSP00000105484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109858.1Link to Ensembl Protein Viewer:ENSMUSP00000105484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109858Re-query CCDS DB by Protein ID:ENSMUSP00000105484
Original member Current member EBI ENSMUST00000109859.8 ENSMUSP00000105485.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109859.8Link to Ensembl Protein Viewer:ENSMUSP00000105485.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109859Re-query CCDS DB by Protein ID:ENSMUSP00000105485
Original member NCBI NM_001164820.1 NP_001158292.1 Updated not alive Link to Nucleotide Sequence:NM_001164820.1Link to Protein Sequence:NP_001158292.1Re-query CCDS DB by Nucleotide ID:NM_001164820Re-query CCDS DB by Protein ID:NP_001158292
Current member NCBI NM_001164820.2 NP_001158292.1 Accepted alive Link to Nucleotide Sequence:NM_001164820.2Link to Protein Sequence:NP_001158292.1Re-query CCDS DB by Nucleotide ID:NM_001164820Re-query CCDS DB by Protein ID:NP_001158292Link to BLAST:NP_001158292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158292.1 250 Q9D6X5-2 250 100% 0 0

Chromosomal Locations for CCDS 50749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152004121 152004678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152007481 152007604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152007946 152008016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCCTTCCTGACACACCTACTGGTCTGCGTCTTTGGCATGGGCTCCTGGGTGGCCATCAATGGGCTCT
GGGTGGAGCTGCCCCTGCTGGTGACTGAGTTGCCCGAGGCCTGGTACCTGCCTTCTTACCTCACTGTGGT
CATCCAGCTGGCCAACATAGGCCCCCTCCTGGTCACCCTGATGCACCGCTTCCGACCCGGCTGCCTGTCT
GAGGTGCCTGTGATCTTCCTTATCCTGTGCGTAGGCACGGCTGCCTGCATTCTCCTAGCCTTCCTGTGGA
ACGTGACCTCCTGGATACAGGGTGGACAGCATAGTGTGGCCTTCATCGTCCTCACCTTCTTCCTGGCCCT
GGTGGACTGCACCTCTTCTGTCACCTTCTTGCCCTTCATGAGCCAGCTGCCTACGTACTATCTTACCACC
TTCTTCATAGGCGAGGGGCTCAGTGGCCTCCTGCCTGCCCTGGTGGCCCTTGTCCAAGGCTCCGGTATCA
CCACCTGTGTCAATGTCACGGAGACACCAGGGACCACCTTGAACACTATGGAGACTCCCATCACTCAGGT
CGCTGTTATTCCTGGGGGTGCTCACAGTGTTGGGGACCGGCTTTGGGGCCTACAATATGGCCATGGCTGC
TATGAGCCCCTGCCCTGTCCTGCAGGGTCACTGGGGTGGAGAAGTCCTTATCGTGCTCTCCTGGGTGCTG
TTTGCAGCCTGTCTCAGCTATGTCAAGGTGATGCTGGGTGTGATCTTGCGTGA

Translation (250 aa):
MAFLTHLLVCVFGMGSWVAINGLWVELPLLVTELPEAWYLPSYLTVVIQLANIGPLLVTLMHRFRPGCLS
EVPVIFLILCVGTAACILLAFLWNVTSWIQGGQHSVAFIVLTFFLALVDCTSSVTFLPFMSQLPTYYLTT
FFIGEGLSGLLPALVALVQGSGITTCVNVTETPGTTLNTMETPITQVAVIPGGAHSVGDRLWGLQYGHGC
YEPLPCPAGSLGWRSPYRALLGAVCSLSQLCQGDAGCDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH