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Report for CCDS50833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50833.1 Public Mus musculus 2 Gm14326 23 108 98 CCDS HistoryNCBI Gene:665211Re-query CCDS DB by CCDS ID:50833.1Re-query CCDS DB by GeneID:665211See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108930.8 ENSMUSP00000104558.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108930.8Link to Ensembl Protein Viewer:ENSMUSP00000104558.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108930Re-query CCDS DB by Protein ID:ENSMUSP00000104558
Original member Current member EBI ENSMUST00000178829.7 ENSMUSP00000137615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178829.7Link to Ensembl Protein Viewer:ENSMUSP00000137615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178829Re-query CCDS DB by Protein ID:ENSMUSP00000137615
Original member Current member NCBI NM_001190302.2 NP_001177231.1 Accepted alive Link to Nucleotide Sequence:NM_001190302.2Link to Protein Sequence:NP_001177231.1Re-query CCDS DB by Nucleotide ID:NM_001190302Re-query CCDS DB by Protein ID:NP_001177231Link to BLAST:NP_001177231.1

Chromosomal Locations for CCDS 50833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 177945537 177947010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177948170 177948230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177948437 177948563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177953682 177953684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGATTTAGTCACCTATGATGATGTGCAGGTGAACTTCACTCGGGATGAGTGGGCTTTGCTGGATCCTT
CTCAGAAGAGTCTCTACAAAGGTGTGATGCTAGAGACCTATAGGAATCTCACAGCTATAGGTTACATTTG
GGAAGAACATACAATTGAAGACCATTTTCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTGTTCT
GCAGAGCAACCCTCTGAGTTTATTCAATGTGGTAAAGCCTTTGCATATGAGAGTGGTAGACAAAGGCATC
AAATTAAACATAATGGAGAGAAACACCATGACTGTAACCAATGTGGTAAGGACTTTAGAACATGGAATGT
CCTGCAAATACATAAGCGAACACATACAGGAGAGAAACCCTATGACTGTAAACAATGTGGTAAAGCCTTT
GCAAGAAGCTGTCATCTCCGAATACATAATCGAACACATGCAGGAGAGAAACAGTATGAATGTAACCAAT
GTGGTAAAGCTTTTAAAAGAAGGAGTGACCTCCAAATACATAAGCGAACACATACAGGAGAGAAACCCTA
TGAATGTAACCAATGTGGAAAAGCCTTTGTAAGCAGTGGTGACCTCCAAAAACATAAACGAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTTCACAAAGCAGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGGAACCAATGTGGAAAAGCCTTTGCAAGAAGTGGTGA
CCTCCAAAAACATAAGCGAACACATACAGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTT
GCACATAGCAGTCATCTCCACATACATGAGCGAAGACATACAGGAGACAAACCCTATGAATGTAAACAAT
GTGGTAAAGCCTTTGCAGTATTCTATACTCTCCAAATGCATAAGCGAACACATACAGGAGACAAACCCTA
TGAATGTAAACAATGTGGTAAAGCCTTTACAGTAATCTATACTCTCCAAATGCATAAGCAAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTTCACAAAGCAGACATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTTGCAAGAAGTGGTGA
CCAACAAGAACATAAGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCTTTT
ATAAGAAGGAGAGTCCTCCAAATACATAAGCGAACACATACAGGAGAGAAATCATATGAATGTAAACAAT
GTGGTAAAGCCTTTGCAGGAAGCAGTCATCTCCGAATACATAAGCGAACACATACAGGAGAGAAACCCTA
TGAATGTAACCAATGTGGTAAAGCTTTTATAACAAGGAGAGTCCTCCAAATACATAAGCGAACACATACC
GGAGAGAAATCATATGAATGTAAACAATGTGGTAAAGCCTTCGCAAGCAGTAGTGACCTCCAAAAACATA
AACGGACACATTCCGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCTTTTGCACAAAGCAGTCA
TCTCCGAATACATAAGCAAACACATACAGGAGAGAGACCCTATGAATGTAACTAG

Translation (554 aa):
MDLVTYDDVQVNFTRDEWALLDPSQKSLYKGVMLETYRNLTAIGYIWEEHTIEDHFQTSRSHGRHERSCS
AEQPSEFIQCGKAFAYESGRQRHQIKHNGEKHHDCNQCGKDFRTWNVLQIHKRTHTGEKPYDCKQCGKAF
ARSCHLRIHNRTHAGEKQYECNQCGKAFKRRSDLQIHKRTHTGEKPYECNQCGKAFVSSGDLQKHKRTHT
GEKPYECKQCGKAFSQSSHLRIHKRTHTGEKPYEWNQCGKAFARSGDLQKHKRTHTGEKPYECKQCGKAF
AHSSHLHIHERRHTGDKPYECKQCGKAFAVFYTLQMHKRTHTGDKPYECKQCGKAFTVIYTLQMHKQTHT
GEKPYECKQCGKAFSQSRHLRIHKRTHTGEKPYECNQCGKAFARSGDQQEHKRTHTGEKPYECNQCGKAF
IRRRVLQIHKRTHTGEKSYECKQCGKAFAGSSHLRIHKRTHTGEKPYECNQCGKAFITRRVLQIHKRTHT
GEKSYECKQCGKAFASSSDLQKHKRTHSGEKPYECKQCGKAFAQSSHLRIHKQTHTGERPYECN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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