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Report for CCDS50852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50852.1 Public Mus musculus 2 Rtel1 23 108 98 CCDS HistoryNCBI Gene:269400Re-query CCDS DB by CCDS ID:50852.1Re-query CCDS DB by GeneID:269400See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108815.7 ENSMUSP00000104443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108815.7Link to Ensembl Protein Viewer:ENSMUSP00000104443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108815Re-query CCDS DB by Protein ID:ENSMUSP00000104443
Original member NCBI NM_001166667.1 NP_001160139.1 Updated not alive Link to Nucleotide Sequence:NM_001166667.1Link to Protein Sequence:NP_001160139.1Re-query CCDS DB by Nucleotide ID:NM_001166667Re-query CCDS DB by Protein ID:NP_001160139
Current member NCBI NM_001166667.2 NP_001160139.1 Accepted alive Link to Nucleotide Sequence:NM_001166667.2Link to Protein Sequence:NP_001160139.1Re-query CCDS DB by Nucleotide ID:NM_001166667Re-query CCDS DB by Protein ID:NP_001160139Link to BLAST:NP_001160139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160139.1 1164 Q0VGM9-5 1164 100% 0 0

Chromosomal Locations for CCDS 50852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181320956 181321057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181322312 181322510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181322801 181322894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181323363 181323444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181323684 181323744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181328603 181328678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181330793 181330877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181334912 181334977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181335893 181336046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181339056 181339094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181339163 181339241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181340496 181340593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181341525 181341580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181346832 181346906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181347013 181347094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181349175 181349307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181349463 181349576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181349669 181349709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181349895 181349980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181350126 181350203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181350635 181350712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181351027 181351173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181351252 181351367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181351576 181351699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181351803 181351953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181352041 181352180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181352753 181352848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181353977 181354175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181354353 181354442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181355328 181355552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181355651 181355812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181355924 181356090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3495 nt):
ATGCCCAGGGTAGTCCTGAATGGTGTGACAGTGGATTTTCCTTTCCAGCCCTACCCATGCCAACAGGAAT
ATATGACCAAGGTGCTAGAATGTCTCCAGAAGAAAGTGAATGGCATCCTGGAGAGCCCCACAGGCACTGG
GAAGACGCTGTGCCTCCTCTGTTCCACCTTGGCCTGGCAACAACATCTCCGAGATGCAGTTTCTTCCCTA
AAGATTGCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGGGGAGTGCTGCTG
CCGCCAGCGGAGACTCAATAGAGTGCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAACGCACTC
CCAGCTAACTCAGGTCATCCGTGAGCTTCGGAATACCGCCTACCGGCCCAAGGTATGTGTGCTGGGCTCC
CGGGAGCAGCTGTGTATTCATCCTGAAGTGAAGAAGCAGGAGAGTAATCACATGCAGATCAGTTTGTGCC
GCAAGAAGGTAGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGAAGCGAAATTCCTGGAGCAAGATTT
GGCTACCCCCATCCTGGATATTGAGGACCTTGTCAAGAATGGAAGCAAACAAAAAATGTGCCCATACTAC
CTTTCTCGAAACATGAAACAGCAAGCGGACATCATCTTTATGCCATACAATTACCTGTTGGATGCTAAGA
GTCGTAAGGCGCACAGCATTGACCTGAAGGGAACAGTTGTGATCTTTGATGAAGCTCACAATGTGGAGAA
GATATGTGAGGAGTCAGCCTCCTTTGACTTGACTCCCCGTGATGTGGCTTCAGGACTGGAGATTATCAAC
CAGGTTTTGGAGGAACAAGCCCGGGTGACTCAGCAGGGTGAACTCCAACAGGAGTTCATTGTAGACACGT
CCAGCTCAGGACTCAACATGGAGCTGGAAGACATCGCAAAGCTAAAGATGATCCTGCTTCGCCTGGAGGA
GGCTATTGATGCCGTTCAGCTGCCTGGGGATGACAGAGGCGTCACCAAACCTGGAAGCTATATCTTCGAG
CTGTTTGCTGAAGCTCAAATAACATTTCAAACCAAAGGCTGCATTTTGGAATCACTGGACCAGATAATCC
AGCACCTGGCAGGCCGTACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTTATGGACATTATCCA
GATTGTGTTCAGCGTGGACCCTCCGGAAGGCAGCCCTGGTTCTCTGGTGGGGCTGGGTATCTCACATTCC
TATAAGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGCTAAGCGGTCAGATGCCTGGAGTACCA
CTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGGTGCTTCAGTCCCAGCCAGAGTATGCGGGAACT
GGTCTGCCAAGGAGTTCGTACCCTTATCCTCACCAGCGGTACCCTGGCTCCACTGTCTTCCTTTGCTCTG
GAGATGCAGATTCCATTCCCAGTCTGTCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTGG
GGATTGTCCCCAGAGGCCCTGATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTG
TTTATCTTCCCTGGGGAAGGCTCTGAGCAACATTGCTCGCGTGGTGCCCCATGGGCTTCTGGTCTTCTTC
CCTTCCTACCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGTACAAGGATTGGCCAGGAAGGTAGAGG
CACTAAAGCCTCTGTTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACTACCA
ACAAGTTGCCTCCCCTGCGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGGGGAAAGGCCAGCGAAGGG
CTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATATCCTCCACGCATGGATC
CCCGTGTTGTCCTCAAGATGCAGTTCTTGGATGAGATGAGAGGCCGGAGTGGGGTTGGAGGCCAGTGCCT
CTCTGGGCAGGAATGGTACCAGCAGCAAGCATCCAGGGCTGTGAACCAGGCTATTGGGAGGGTTATTCGA
CACCGCCATGACTATGGGGCCATCTTCCTGTGTGACCACAGGTTCGCCTATGCTGATGCCAGGGCCCAGC
TGCCCTCCTGGGTGCGCCCCTACCTTAAGGTGTATGACAACTTTGGCCATGTCATCCGAGATGTGGCCCA
GTTCTTCCGTGTTGCTCAGAAAACTATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAG
GGAGAAATTGCTCTCAAGGATGCTACATTGTCCAGCTACTCCCTCTCTACCAGGAAAGCCATGAGTTTGG
ATGTGCATGTGCCCAGCCTGAGGCAGAAGCCCATAGGATTACCAGCTGCTGGAGACTCTGAGAGCAGCCT
GTGTGGGGAGTATGAGCAGCAGACATTTTCTGCCCAGCAGAGACCTATGGGACTGCTAGCTGCCTTAGAA
TACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTGGGCTCCTCCACCCCATCTCTCCGGTGCG
AGAAGAGGCTGTCTACTGAGCAAAAAGGAGGAAGGAAGAAAGTCAGGCTGGTCAACCATCCGGAGGAACC
AATGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCTGTGAAGCAAGCACTGAGCCAAGCT
AACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTGATGACTTTGAAGCCCTAGTGGCCT
CTCTCACCTGTCTCTTTGCTGAAGACCCCAAGAAACACACCCTGCTTAAAGGTTTCTACCAGTTTGTTCG
ACCCCACCACAAGCAGCAGTTTGAGGACATCTGCTTCCAGCTAACAGGCCAACGATGTGGCTACCAGCCA
GGACACACCAGCCATTGTACAAAAGTGGGATGTGCAGTAGAAAAACCTGGCCAGCCTGCTGTGAGTGACT
ACCTATCTGATGTCCACAAGGCTCTGGGATCTGCAAGCTGCAACCAGCTTACGGCAGCTCTGAGGGCATA
CAAACAGGATGATGACCTGGACAAGGTGGTGGCTGTGGTGGCAGCACTGACCACTGCAAAACCTGAACAC
TTACCCTTGCTACAGAGATTTGGCATGTTTGTGCGTCGGCATCATAAGCCTCAGTTCCTACAGACCTGTG
CAGACCTAATGGGCCTGCCTACCACAGGCAAGGACTTGGAGCTCGAAGGTCCCAGAGATGAGAGCCCAAC
TGTGCCTCCTGAGCTTACCCATGAGGACCTGAAACCAGGGCCCTCGATGTCCAAGAAACCTGAGAAGACC
CAGAGTAAGATCTCATCCTTCTTTAGACAGAGGCCAGATGAGAGTGTGAGGTCTGATGATACCACCCCAA
AGCCCATGCAACTTCCTCCTAGACTACCCCATGAGCTTATGAAGCCTCATCGGAGTAAGCAATAG

Translation (1164 aa):
MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLRDAVSSL
KIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQVIRELRNTAYRPKVCVLGS
REQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYY
LSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIIN
QVLEEQARVTQQGELQQEFIVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFE
LFAEAQITFQTKGCILESLDQIIQHLAGRTGVFTNTAGLQKLMDIIQIVFSVDPPEGSPGSLVGLGISHS
YKVHIHPETSHRRAAKRSDAWSTTASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFAL
EMQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFF
PSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEG
LDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMRGRSGVGGQCLSGQEWYQQQASRAVNQAIGRVIR
HRHDYGAIFLCDHRFAYADARAQLPSWVRPYLKVYDNFGHVIRDVAQFFRVAQKTMPLPVPQAVTSSVSE
GEIALKDATLSSYSLSTRKAMSLDVHVPSLRQKPIGLPAAGDSESSLCGEYEQQTFSAQQRPMGLLAALE
YNEQKAGASEEQALGSSTPSLRCEKRLSTEQKGGRKKVRLVNHPEEPMAGTQAGRAKMFMVAVKQALSQA
NFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHHKQQFEDICFQLTGQRCGYQP
GHTSHCTKVGCAVEKPGQPAVSDYLSDVHKALGSASCNQLTAALRAYKQDDDLDKVVAVVAALTTAKPEH
LPLLQRFGMFVRRHHKPQFLQTCADLMGLPTTGKDLELEGPRDESPTVPPELTHEDLKPGPSMSKKPEKT
QSKISSFFRQRPDESVRSDDTTPKPMQLPPRLPHELMKPHRSKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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