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Report for CCDS5088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5088.1 Public Homo sapiens 6 RPF2 24 110 108 CCDS HistoryNCBI Gene:84154Re-query CCDS DB by CCDS ID:5088.1Re-query CCDS DB by GeneID:84154See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441448.7 ENSP00000402338.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441448.7Link to Ensembl Protein Viewer:ENSP00000402338.2Re-query CCDS DB by Nucleotide ID:ENST00000441448Re-query CCDS DB by Protein ID:ENSP00000402338
Original member Current member NCBI NM_032194.3 NP_115570.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032194.3Link to Protein Sequence:NP_115570.1Re-query CCDS DB by Nucleotide ID:NM_032194Re-query CCDS DB by Protein ID:NP_115570Link to BLAST:NP_115570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115570.1 306 Q9H7B2 306 100% 0 0

Chromosomal Locations for CCDS 5088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 110982107 110982129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110985006 110985138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110989028 110989065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110991747 110991786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110997183 110997264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110999711 110999787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111008038 111008137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111015754 111015856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111024183 111024327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111025403 111025582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGACACTCTGGATCGAGTAGTAAAGCCCAAAACGAAAAGAGCCAAGAGATTCCTTGAGAAGAGAGAAC
CGAAACTCAATGAAAATATTAAAAATGCCATGCTGATTAAAGGGGGAAATGCAAATGCAACAGTGACAAA
AGTACTTAAAGATGTGTATGCACTGAAAAAACCATACGGTGTACTATATAAAAAGAAAAATATTACAAGA
CCTTTTGAGGATCAGACATCACTGGAATTCTTTTCAAAGAAGTCAGATTGTTCTTTATTCATGTTTGGCT
CCCATAATAAGAAGCGGCCAAATAATCTAGTAATAGGTCGTATGTATGACTACCATGTGCTGGATATGAT
TGAATTAGGTATTGAGAATTTTGTCTCTCTAAAAGACATTAAGAACAGTAAATGTCCTGAGGGAACAAAA
CCCATGCTGATATTTGCTGGCGATGATTTCGATGTAACAGAAGATTATAGAAGACTAAAAAGTCTTCTTA
TTGATTTCTTCAGAGGCCCCACAGTATCAAATATCCGCCTGGCTGGATTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAGATTTACTTTCGAAGCTATAAGTTGCTGTTGAAGAAATCTGGTTGCAGAACACCA
CGGATTGAATTGGAAGAGATGGGACCCTCATTGGATCTGGTTCTGAGGAGGACACACCTGGCATCGGATG
ACCTTTATAAATTATCTATGAAAATGCCAAAAGCTCTCAAGCCAAAGAAGAAGAAAAATATTTCCCATGA
TACTTTTGGTACAACTTATGGAAGGATTCATATGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAA
ATGAAGGGGTTGAAGAAGCGACCTGCAGAAAGGATAACAGAAGACCACGAGAAAAAGTCAAAAAGAATTA
AAAAAAATTGA

Translation (306 aa):
MDTLDRVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNITR
PFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTK
PMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTP
RIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQTRK
MKGLKKRPAERITEDHEKKSKRIKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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