NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50924.1 Public Mus musculus 3 Vmn2r7 23 108 98 CCDS HistoryNCBI Gene:319217Re-query CCDS DB by CCDS ID:50924.1Re-query CCDS DB by GeneID:319217See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168072.3 ENSMUSP00000131220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168072.3Link to Ensembl Protein Viewer:ENSMUSP00000131220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168072Re-query CCDS DB by Protein ID:ENSMUSP00000131220
Original member Current member NCBI NM_175674.3 NP_783605.2 Accepted alive Link to Nucleotide Sequence:NM_175674.3Link to Protein Sequence:NP_783605.2Re-query CCDS DB by Nucleotide ID:NM_175674Re-query CCDS DB by Protein ID:NP_783605Link to BLAST:NP_783605.2

Chromosomal Locations for CCDS 50924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 64690660 64691642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64692984 64693107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64707024 64707254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64715761 64716630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64719327 64719593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGAAAACCATGATCCACACCATCAAGGAGATTAATGAGAGGAAGGATATTTTGCCCAACCACACTCTGG
GCTACCAGATCTTTGACAACTGTTTCTCCATCACCAAAGCAATGGAGTCATCTTCAGTGTTTCTAACAGG
GCAGGAGGAATACAAACCTAACTGGAGAAACAGCACTGGAAAATTTCTAATTGGAATTATTGGAGCAGGA
GGATCAACTATGTCAGCTGCTGTTTCAAGAATTGTAGGGATTCATCATGTACCTCAGGTGGGATATGCTT
CTTCCTCCTCAATTTTTAGTAATGATATTCAATTTCCATACATTCTACGCACAATACCCAGTGATAAATT
CCAGTCTGAGGCCATCGTGAATCTAATTAGACACTTTGGTTGGGTCTGGGTAGGTGCTATTGCATCTGAT
GATGATTATGGAAAATATGGAGTAAAATTCTTTAGGGAAGAAATGGAGAGTGCCAACCTTTGTGTTGCTT
TCTCTGAAACCATTCCAAAAGTCTACTCCAATGAGAAAATGAAAATAGCTGTTGATGCAGTAAAGAGTTC
CACTGCCAAAGTCATTGTGCTTTATGCAACTGACATTGACCTCAGCCCCTTTGTGCTGGAAGTGATTCAT
CATAACATAACTGACAGGACATGGATAGCCACCGAAGCCTGGATTACCTCAGCTCTCATTGCAAAGCCTG
AGTATTTCCCCTATTTTGGTGGAACTATTGGATTTGCAGTACCAAGAAGTGTTATACCAGGACTAAAAGA
ATTCCTTTATGATGTACACCCTAGCAAGGATCCAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCT
TTTAACTGTACCTGGCCCAACAGCACTGTGCCTTACAATGTGGACCACAGAGTGAATATGACTGGTAAAG
AAGACAGACTGTATGACATGTCTGATCAGCTCTGCACTGGAGAGGAGAAGCTGGAAGATCTGAAAAGTAC
CTATCTGGATACATCTCAGCTAAGAATCACAAACAATGTCAGACAAGCTGTGTATCTTTTGGCTCATGCG
ATAGATCTTTTTAGCCAAGCTGACATAAGAGAAGAATATAGGGAAAATGCAGTACTTGAAAATAAACCTA
ACTTTGAGTCTGTAAAGCTATGGTTGTACTTGACAAAAATAAAATTCATTACCCATGATGGAAGGAAAAT
AGAACTTGGCAGGAATGGAGATGTATTAAATGGATCTTATGATATCCTCAATTGGCACATGGATAATACT
GGAGAAATAACCTTTGTCAAAGTTGGAGAATACAAATTCACAAGTTCAAAATATGAATTTGTTCTTCCAA
AGAACTCAACATTATTTTGGAACACTGAATCTTCAAGGCTTCCAGATTCAGTCTGCACAAAAGTGTGTCC
TCCAGGGACTCGGAAGGGGATTCACCAGGGACAGCCCATATGCTGCTTTGATTGCATCCCATGTACTGAT
GGATATGTGTCAGAGAAACCAGGTCAAAGGCTTTGTGATCCATGTGGGGAAAATGACTGGTCCAATGCGG
AGAAGAACAAGTGTGTGCCAAAGCATGTGGAATTCCTTGCTTATGAGGAGGCCCTGGGGTTCACCCTTGT
CATCCTTTCCATCTTTGGAGCTCTTGTGGTCTTGGCAGTCACTGTTGTGTATGTGATCCACAGGCACACT
CCATTGGTGAAAGCCAATGACCGAGAGCTGAGCTTCCTCATTCAGGTGTCTCTGGGAATCACAGTGCTAT
CATCCATGTTGTTCATAGGCAAGCCATGCAACTGGTCCTGCAAGACCCGTCAGGTCACTCTGGCACTGGG
CTTTTGCCTTTGTTTGTCTTCCATTCTTGGAAAGACTGTTTCACTCTTTTTTGCCTACAGGATGTCCATA
TCTAAAACTCGGCTAATATCCATGCACCCCATTTTTCGTAAACTCATTGTGCTGATCTGTGTTGTAGGGG
AGATTGGTGTATGCACAGCTTACTTGGTGTTGGAGCCTCCAAGCCTGTTCAAGAACATTGAACCTCAAAA
TGTAAAGATCATCTTTGAATGCAATGAAGGTTCTATAGAGTTTCTGTGCTCCATTTTTGGGTTTGATGTT
CTTTTGGCTCTGCTGTGTTTTGTTACCACCTTTGTGGCTCGCCAGCTGCCAGATAATTATTATGAAGGTA
AATGTATCACTTTTGGAATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGGGCAC
CAAAGGCAAATTCAATGTGGCTGTGGAAATATTTGCCATTTTGGCATCCAGCTATGGCTTGTTAGGCTGT
GTATTTCTTCCCAAGTGTTTCATTATCTTGCTGAGGCCAAAGAGGAACACTGATGAAACTGTTGGTGGAA
GAGTCCCCACTGTTGACAGGAGCATCCAGCTGACCTCAGCTTCTGTGAGCAGTGAGCTTAACAGCACCAC
GGTGTCCACTGTTCTGGATGAGTAG

Translation (824 aa):
MKTMIHTIKEINERKDILPNHTLGYQIFDNCFSITKAMESSSVFLTGQEEYKPNWRNSTGKFLIGIIGAG
GSTMSAAVSRIVGIHHVPQVGYASSSSIFSNDIQFPYILRTIPSDKFQSEAIVNLIRHFGWVWVGAIASD
DDYGKYGVKFFREEMESANLCVAFSETIPKVYSNEKMKIAVDAVKSSTAKVIVLYATDIDLSPFVLEVIH
HNITDRTWIATEAWITSALIAKPEYFPYFGGTIGFAVPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTA
FNCTWPNSTVPYNVDHRVNMTGKEDRLYDMSDQLCTGEEKLEDLKSTYLDTSQLRITNNVRQAVYLLAHA
IDLFSQADIREEYRENAVLENKPNFESVKLWLYLTKIKFITHDGRKIELGRNGDVLNGSYDILNWHMDNT
GEITFVKVGEYKFTSSKYEFVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGIHQGQPICCFDCIPCTD
GYVSEKPGQRLCDPCGENDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHT
PLVKANDRELSFLIQVSLGITVLSSMLFIGKPCNWSCKTRQVTLALGFCLCLSSILGKTVSLFFAYRMSI
SKTRLISMHPIFRKLIVLICVVGEIGVCTAYLVLEPPSLFKNIEPQNVKIIFECNEGSIEFLCSIFGFDV
LLALLCFVTTFVARQLPDNYYEGKCITFGMLVFFIVWISFVPAYLGTKGKFNVAVEIFAILASSYGLLGC
VFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTTVSTVLDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH