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Report for CCDS50984.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50984.2 Public Mus musculus 3 Cgn 23 108 98 CCDS HistoryNCBI Gene:70737Re-query CCDS DB by CCDS ID:50984.2Re-query CCDS DB by GeneID:70737See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50984.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107273.8 ENSMUSP00000102894.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107273.8Link to Ensembl Protein Viewer:ENSMUSP00000102894.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107273Re-query CCDS DB by Protein ID:ENSMUSP00000102894
Original member Current member NCBI NM_001037711.3 NP_001032800.3 Accepted alive Link to Nucleotide Sequence:NM_001037711.3Link to Protein Sequence:NP_001032800.3Re-query CCDS DB by Nucleotide ID:NM_001037711Re-query CCDS DB by Protein ID:NP_001032800Link to BLAST:NP_001032800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032800.3 1191 P59242-1 1191 99.7481% 0 3

Chromosomal Locations for CCDS 50984.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94761360 94761501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94761774 94761937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94762559 94762667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94762982 94763100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94763188 94763271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94764462 94764551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94765499 94765660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94767117 94767287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94769160 94769417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94769962 94770168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94770493 94770702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94773128 94773260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94773497 94773645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94774203 94774415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94774900 94775032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94776109 94776236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94777994 94778089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94778201 94778270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94778379 94778479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94779151 94779987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3576 nt):
ATGGCTGATCCCCGGGGCCCCGTAGACCATGGAGTTCAAATTCGATTTATTACAGAGCCAGAGGGTGCTA
CTGAAATGGGCACCCTTCGTCGTAGTGGGCGGCGCCCTGCAAGGGATGCAAGAGCCAGTACCTATGGGGT
CGCTGTGCGTGTGCAGGGCATCGCCGGGCAACCGTTTGTGGTTCTTAACAGTGGAGAGAAAGGGACTGAC
TCCTTTGGGGTCCAGATCAAAGGGGGCAACAACCGGGGGTCCCCAGGTGCACTGAGCTCCGATTCAGAGC
TCCCCGAAAACCCCTACTCTCAAGTCAAGGGACGCCCTGCCACTTCTCGGAGCAGCACATCTGATGAGGA
GCCCAAGGACCACTTGAATGGAAAACTGATCCGTTCCCAGTCGCAAGCCTCTCTGACCGGGCTTGCCTTT
ATGAGTCCTAGTAATAGGAGCACCAGCTTGCTGGAACTAGCCCCTAAACCGACTTCCTCGATTAACACCA
TTGACACTGCCCCCTTGTCTTCAGTGGACTCGCTCATCAACAAGTTTGATAGTCAGAAGGGGGGGCAGGT
CCGGGGTCGCACTGGGCGCCGCACAAGGACACTTCCCCACGAACAGCGCAAGCGGAGCCAGAGTCTGGAC
AGCAGGCTCCCACGGGATACACGTGAGGAACGGGAGCACCAGTCCGCTAACCACTGGACCCGCGGCACAA
AGTATGACAACCATGTGGACAGTTCAAAGAACCCATCGCAGAAGCAGAGCCCGTTCAGCAGCTTCAGCCG
TTCGCGTCAGACTCAAGACTGGGTGCTTCAGAGTTTTGAGGAGACACGGGATCCAGCCATGGTGCAGTTC
AAATCAACTCCAGACCTTCTCAGAGACCAGAGAGAGACAGCGCCACCAGGCAGTGCGGACCATGTGAAGG
CCACCATCTATGGCATCCTAAGGGAGGGAAGCTCGGAGAGTGAGGCATCTGTGAGGAGGAAAGTTAGTTT
GGTGCTGGAGCAAATGCAGCCTCTGGGGATGGTTTCTCCTGCTTCTACCAAGGCCCTGGCAGGACAGGCT
GAGCTTACCCGAAAAATGGAGGAACTTCAGAAGAAGCTGGATGAGGAGGTGAAGAAGCGGCAGAAGCTAG
AACCATCCAGGGTTGGGCTGGAGAGGCAGCTGGAGGAGAAGGCTGAAGAGTGCCACCGACTGCAGGAGTT
GCTGGAGAGGAGAAAGGGGGAGGTCCAGCAGAGCAGCAAGGAACTTCAGAACATGAAGCTCCTGCTAGGC
CAGGAAGAAGGACTACGGCATGGGCTGGAGGCCCAGGTGAAGGAGCTACAGCTTAAGCTCAAGCATAGCC
AGAGTCCCGATTCTGGAAAGGAAAGTCTCCTAAAGGACTTGTTAGACACCCGGGAACTTCTAGAAGAACT
CTTAGAGGGCAAACAACGAGTAGAGGAGCAGCTCAGGCTGAGGGAACGGGAGCTGACAGCCCTGAAGGGG
GCCCTGAAAGAGGAGGTGGCCTCCCACGACCAGGAGGTGGAACATGTCCGGCTGCAGTACCAGCGAGACA
CGGAGCAGCTTCGCCGGAGCATGCAAGATGCGACCCAGGACCATGCTGCACTGGAGGCTGAGAGGCAGAA
GATGTCTTCCCTCGTGCGGGAGCTGCAAAGAGAGCTAGAGGAGACCTCTGAGGAGACAGGGCATTGGCAG
AGCATGTTCCAGAAGAACAAGGAAGAGCTGAGAGCCACCAAGCAGGAACTGCTGCAACTGCGGATGGAGA
AGGAGGAGATGGAAGAGGAACTTGGGGAGAAGATGGAGGTCTTACAGAGGGACTTAGAGCAGGCCCGAGC
CAGTACAAGAGATACTCACCAGGTTGAGGAACTTAAAAAGGAGCTTCGACGCACCCAGGGGGAGCTTAAA
GAGCTTCAGGCAGAGCAGCAGAACCAGGAGGTGACTGGGCGACACCAGAACCAGGTGTTAGAGAAGCAGC
TGGCAGCGCTGAGGGAGGAGGCTGATCGAGGCCGAGAGCTGGAGCAGCAGAACCTCCAGCTACAAAAGAC
CCTGCAGCAACTGCGGCAGGACTGTGAAGAGGCTTCCAAGGCTAAGGTGGCATCAGAGACAGAGGCCATG
GTGCTGGGGCAGCGTCGGGCAACCGTGGAAACCACACTTCGGGAGACACAAGAGGAAAATGACGAATTCC
GAAGGCGCATCCTGGGTCTGGAGCAGCAGTTGAAGGAGGCCCGAGGTCTGGCGGAAGGTGGGGAAGCGGT
GGAGGCACGGCTTCGGGACAAAGTGCATCGGCTGGAGGTAGAGAAACAGCAGCTGGAAGAGGCTTTGAAT
GCTGCCCGGGAGGAGGAGGGGAACCTGGCAGCAGCCAAGCGGGCTCTGGAGGTCCGGCTAGATGAGGCCC
AGCGGGGGCTGGCACGCCTTGGGCAGGAACAGCAAGCACTGAACCGGGCCCTAGAGGAAGAGGGGAAGCA
GCGGGAGGCTCTCCGGAGGAGCAAGGCAGAGTTGGAGGAGCAGAAGCGTTTGCTGAACAGGACTGTAGAC
CGACTCAACAAAGAGCTGGAGCAGATTGGGGATGACTCCAAGCTAGCCCTGCAGCAGCTCCAGGCTCAGA
TGGAAGATTACAAGGAAAAGGCCCGGAAGGAAGTAGCTGATGCCCAGCGTCAGGCCAAGGATTGGGCCAG
TGAGGCTGAAAAGAATTCAGGGGGGCTGAGCCGGCTTCAGGATGAGCTGCAAAGGCTGCGGCAAGCCCTG
CAGACATCCCAGGCTGAGCGGGACACAGCCAGGCTGGACAAAGAGCTGCTGGCCCAGCGACTGCAGGGTC
TAGAGCAAGAGGCTGAGAACAAGAAACGCTTCCAGGACGACAAGGCTCGACAGCTGAAGAGCCTAGAGGA
GAAAGTCTCGCGGCTGGAAGCGGAGTTAGATGAAGAAAAGAACACTGTGGAACTGTTAACAGATCGGGTG
AACCGTGGCCGGGATCAGGTGGATCAACTGAGGACAGAGCTCATGCAGGAGAGATCTGCTCGACAGGACT
TGGAGTGTGACAAAATCTCCTTGGAGAGACAGAACAAGGATTTGAAGACCCGGTTGGCCAGTTCAGAGGG
CTTCCAGAAACCCAGCGCTAGCCTCTCCCAGCTTGAGTCCCAGAATCAGCTGCTGCAAGAGCGGCTGCAA
GCTGAAGAGAGAGAGAAGACAGTTCTGCAGTCCACCAATCGCAAACTAGAACGGAGGGTTAAGGAGCTCT
CCATCCAGATTGATGATGAACGGCAGCATGTCAACGACCAGAAGGACCAGCTAACCCTGAGGGTGAAGGC
TTTGAAGCGGCAGGTGGATGAAGCAGAAGAGGAAATTGAGCGGCTGGACAGCCTGAGGAAGAAGGCACAG
CGGGAACTGGAGGAACAGCATGAGGTCAATGAACAGCTCCAAGCCCGGATCAAATCCTTGGAAAAGGATG
CCTGGCGGAAAGCTTCCCGCTCAGCTGCTGAGTCAGCCCTCAAACAAGAGGGGCTGAGCTCTGATGAGGA
GTTTGACAACGTCTACGACCCCTCATCCATTGCATCACTGCTTACTGAGAGCAACCTGCAGACTAGCTCA
TGTTAG

Translation (1191 aa):
MADPRGPVDHGVQIRFITEPEGATEMGTLRRSGRRPARDARASTYGVAVRVQGIAGQPFVVLNSGEKGTD
SFGVQIKGGNNRGSPGALSSDSELPENPYSQVKGRPATSRSSTSDEEPKDHLNGKLIRSQSQASLTGLAF
MSPSNRSTSLLELAPKPTSSINTIDTAPLSSVDSLINKFDSQKGGQVRGRTGRRTRTLPHEQRKRSQSLD
SRLPRDTREEREHQSANHWTRGTKYDNHVDSSKNPSQKQSPFSSFSRSRQTQDWVLQSFEETRDPAMVQF
KSTPDLLRDQRETAPPGSADHVKATIYGILREGSSESEASVRRKVSLVLEQMQPLGMVSPASTKALAGQA
ELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLG
QEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKG
ALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQ
SMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELK
ELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAM
VLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALN
AAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVD
RLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQAL
QTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRV
NRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQ
AEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQ
RELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEEFDNVYDPSSIASLLTESNLQTSS
C


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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