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Report for CCDS50988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50988.1 Public Mus musculus 3 Bnipl 23 108 98 CCDS HistoryNCBI Gene:171388Re-query CCDS DB by CCDS ID:50988.1Re-query CCDS DB by GeneID:171388See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098871.10 ENSMUSP00000096468.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098871.10Link to Ensembl Protein Viewer:ENSMUSP00000096468.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098871Re-query CCDS DB by Protein ID:ENSMUSP00000096468
Original member Current member NCBI NM_001168356.1 NP_001161828.1 Accepted alive Link to Nucleotide Sequence:NM_001168356.1Link to Protein Sequence:NP_001161828.1Re-query CCDS DB by Nucleotide ID:NM_001168356Re-query CCDS DB by Protein ID:NP_001161828Link to BLAST:NP_001161828.1

Chromosomal Locations for CCDS 50988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95241825 95241861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95242732 95242830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95242998 95243084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95244985 95245087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95245650 95245832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95248576 95248800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95249806 95249870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95250965 95251008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGGGACCAGGCAAGAAACAGGAAGAGAGACGTTAGAAGGAGGATTGCTTCCTGAGGAACCTGGCTCAC
CTGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGCAGGCACCCCCAGCAGTCTGGCCTTGTGTGGCCA
GCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGAGGGAACAGGAGAAAAC
GGAGCCTCTCCCACCCGCTCTGCGTCTTCCTCTTCTGCTGGCAGCTTGGACCTGGAGGTGGATGAGTTGG
AGACACCATCAGACTCTGAGCAGCTGGACAGCGGACATGAGTTTGAATGGGAAGATGACTTGCCCCGGGC
AGAGGGCCTGGGGGCCAGTGAGGCAGCAGAAAGACTGGGCCGGGGATGCGTGTGCGATGTGGCTGGAGAA
GACGGTCATCGCTGGAGAGTGTTTCGAACAGGACAACGAGAGCAGCGAGTGGACATGACCATCATTGAGC
CCTATAAGAAAGTCTTATCTCATGGAGGTTACCATGGTGATGGCCTCAATGCTGTCATCCTCTTTGCTTC
CTGCTATCTACCCCGAAGCAGCATCCCCAACTACACCTACATCATGGAACACTTATTCAGGCTTCGGAAA
AACCTTCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCT
TCATCAGCTCCAAGTTCACACGAAAGATCCGCTTTCTGGACAGCCTCGGAGAGCTGGCCCAGCTCATCTC
GCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCTGCATGGCTCGAAAGGCACC
TAA

Translation (280 aa):
MGTRQETGRETLEGGLLPEEPGSPGDPEDPQRGSQAGTPSSLALCGQRPMRKRLSAPEWQLSLTEGTGEN
GASPTRSASSSSAGSLDLEVDELETPSDSEQLDSGHEFEWEDDLPRAEGLGASEAAERLGRGCVCDVAGE
DGHRWRVFRTGQREQRVDMTIIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYIMEHLFRLRK
NLRALVVVHATWYVKAFLALVRPFISSKFTRKIRFLDSLGELAQLISLEQVHIPEVVRQLDRDLHGSKGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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