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Report for CCDS51000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51000.1 Public Mus musculus 3 Mtmr11 23 108 98 CCDS HistoryNCBI Gene:194126Re-query CCDS DB by CCDS ID:51000.1Re-query CCDS DB by GeneID:194126See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054356.15 ENSMUSP00000062341.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054356.15Link to Ensembl Protein Viewer:ENSMUSP00000062341.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000054356Re-query CCDS DB by Protein ID:ENSMUSP00000062341
Original member Current member NCBI NM_181409.3 NP_852074.2 Accepted alive Link to Nucleotide Sequence:NM_181409.3Link to Protein Sequence:NP_852074.2Re-query CCDS DB by Nucleotide ID:NM_181409Re-query CCDS DB by Protein ID:NP_852074Link to BLAST:NP_852074.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852074.2 700 Q3V1L6 700 100% 0 0

Chromosomal Locations for CCDS 51000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96162193 96162258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96162629 96162719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96163092 96163213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96163468 96163528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96163668 96163810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96164248 96164326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96164433 96164568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96164786 96164873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96164997 96165085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96165171 96165295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96167812 96167878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96168073 96168143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96168599 96168765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96169036 96169209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96169807 96169989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96170353 96170646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96171086 96171232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGTGGTGGGGGGGCCGGGGCCAGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCCAGAGATGGGGCTCT
CTGGACCGAAGTCTAACCCAGGGAACAGGATGCCGGAGCCCAGCAGTCATCAGCTTGGCAGCTGCCTGGC
CTCTGGTTGTCTCCCAGGGGAGCATATCCTAGCATGGGCACCAGGACGAAGGAAAGGGCCAGGACTAGAC
CTGCCTGGAACTCTGATCTGCACTAACTTTAGGGTAACCTTCCAGCCTTGTGGATGGCAGCGAAAGCAGG
ATACTCCTCTGAGTAGTGAAAATGATTTTGCCTTGATCAACATTGGTCGATTAGAGGCTGTGAGCGGCTT
GTCAAGAGTGCAGCTTCTCCGTCCTGGGTCTCAGCTTAAGTTCATTCCTGAAGAGCTTCTGCTTCATGGC
CGGGACTTCCGGCTGCTTCGAGTTGGTTTTGAGGCTGGAGGGCTGGCACCTCAGGCCTTCCAGGTAACCA
TGGCCATCATTCAAGCCAGAGCTCAGAGCAGTCAAGTCCAGCAGTATAGAGGAATAACCCTGAGCAAAGT
TGGCAAGGTTTCTGGCTCTAGAAAGCCACCCATTCCTCTCTTGGAGACTTTAGAAGACTGGGAAACAGAG
TGCAAGAAGCAAGGGGCCAGAGGCTGGAGGGTTAGCACGGTCAATGAGAGGTTCGATGTAGCTACCAGTC
TTTCAGGTTACTTCTGGGTCCCTAATCGAATTCTGGACAGTGAAGTCAGAAGAGCATTTGCACATTTCCA
TCAGGGCCGTGGACCGCGCCTGTCCTGGCACCACCCCGGAGGCAGTGACCTTCTTCGATGTGGAGGCTTC
TATATAGCAAGTGACCCTAACAAAGAAGATATCAGAGCAGTGGAGTCGATGCTACAGGCTGGGCACTCTG
ATGTTGTCTTGGTAGAGACCATGGATGAGATGCCTAGTCTTGCCGATATCCAACTTGCCCACTTGAAACT
GAGGGCCCTTTGCCTGCCTGACTCATCTGTAGCTGAAGATAAATGGCTCTCAGCCTTGGAAGGAACACGG
TGGTTAGACTATGTCAGGTCTTGTCTTCGAAAGGCCAGCGACATCTCAGTATTAGTGACATCTCGGGTCC
GTTCTGTAGTGCTCCAAGAGCTTGGGGATCGTGATTTCAATGGCCTCCTCTCCTCACTCGTCCAGCTGCT
TTTGGCTCCGGAAGCCCGGACATTGTTTGGTTTCCAGTCACTAGTGCAGCGAGAGTGGGTGGCAGCTGGA
CACCCCTTCCTGACCAGGCTCGGGGACACTGGAGCCAGTGAGGAGGCCCCGGTGTTTCCTCTCTTCCTTG
ACTGTGCCTGGCAGCTCCTCCAGCAGTTTCCAGCGGAATTTGAATTCTCTGAGTTTTTTCTTCTTGCTCT
TCATGATAGTATCAGGGTTCCGGACACCCTCACCTTTCTGAGAAACACTCCCTGGGAGCGCGGGAAGAAG
AGTGGACAGTTCAACTCGTACACACAAGTTTACACCCCTGAGTACTCCCAGCCCCTAGCTGGAAGCTCTG
CTAACTTACATCTGTCTGTCTGGGACTGGGATTTACGCTACAGCAAGGAACAGATATCACAGTTCCTTAA
TCCTGGCTACGATCCGGAGCATTGCCCAGACAGCAGGTTCTCTAGACAGCAGCAAAGCCTCATGGTTCCT
GGACCCCCTAGTTCTATGTGGCTGTTCTCTAGAGGGACCCTGACCCCACTGAATCAGCTCTGTCCTTGGC
AAGACAGCTCCTCCTTGCTGGCAGTCTCTTCTCATTGGCTCCCTCGACCTGCCAGATCCTCCGAAAGCCT
AGCTGACCAGGAATGGGGGCTCCCCTCACATTGGGGAGCTTGCCCTTTACCTCCCGGGCTACTGCTGCCT
GGATATCTGGGACCACAGATCAGGTTCTGGAAACGCTGTTACCTGAGGGGCAGGCCTGAGGTCCAGATGG
GCTCCTCAGCTCTCACAGTCTCTGCCCTTCAGGATGAGCTTTCTCACCTTCAGGAACTGTTAAGACAATG
GACACCAAGAATATCTCCCGAGGACCAGAGCAAGAAAAGAGATCCGAATACCATCCTCTCTCAGATCTGC
TGA

Translation (700 aa):
MWWGGRGQSFNIAPQKEEPEMGLSGPKSNPGNRMPEPSSHQLGSCLASGCLPGEHILAWAPGRRKGPGLD
LPGTLICTNFRVTFQPCGWQRKQDTPLSSENDFALINIGRLEAVSGLSRVQLLRPGSQLKFIPEELLLHG
RDFRLLRVGFEAGGLAPQAFQVTMAIIQARAQSSQVQQYRGITLSKVGKVSGSRKPPIPLLETLEDWETE
CKKQGARGWRVSTVNERFDVATSLSGYFWVPNRILDSEVRRAFAHFHQGRGPRLSWHHPGGSDLLRCGGF
YIASDPNKEDIRAVESMLQAGHSDVVLVETMDEMPSLADIQLAHLKLRALCLPDSSVAEDKWLSALEGTR
WLDYVRSCLRKASDISVLVTSRVRSVVLQELGDRDFNGLLSSLVQLLLAPEARTLFGFQSLVQREWVAAG
HPFLTRLGDTGASEEAPVFPLFLDCAWQLLQQFPAEFEFSEFFLLALHDSIRVPDTLTFLRNTPWERGKK
SGQFNSYTQVYTPEYSQPLAGSSANLHLSVWDWDLRYSKEQISQFLNPGYDPEHCPDSRFSRQQQSLMVP
GPPSSMWLFSRGTLTPLNQLCPWQDSSSLLAVSSHWLPRPARSSESLADQEWGLPSHWGACPLPPGLLLP
GYLGPQIRFWKRCYLRGRPEVQMGSSALTVSALQDELSHLQELLRQWTPRISPEDQSKKRDPNTILSQIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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