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Report for CCDS51140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51140.1 Public Mus musculus 4 Ubap1 23 108 98 CCDS HistoryNCBI Gene:67123Re-query CCDS DB by CCDS ID:51140.1Re-query CCDS DB by GeneID:67123See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072866.11 ENSMUSP00000072643.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072866.11Link to Ensembl Protein Viewer:ENSMUSP00000072643.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072866Re-query CCDS DB by Protein ID:ENSMUSP00000072643
Original member Current member NCBI NM_001355508.1 NP_001342437.1 Accepted alive Link to Nucleotide Sequence:NM_001355508.1Link to Protein Sequence:NP_001342437.1Re-query CCDS DB by Nucleotide ID:NM_001355508Re-query CCDS DB by Protein ID:NP_001342437Link to BLAST:NP_001342437.1
Original member Current member NCBI NM_023305.3 NP_075794.3 Accepted alive Link to Nucleotide Sequence:NM_023305.3Link to Protein Sequence:NP_075794.3Re-query CCDS DB by Nucleotide ID:NM_023305Re-query CCDS DB by Protein ID:NP_075794Link to BLAST:NP_075794.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342437.1 502 Q8BH48-1 502 100% 0 0
NP_075794.3 502 Q8BH48-1 502 100% 0 0

Chromosomal Locations for CCDS 51140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41366897 41366930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41371725 41371849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41378947 41379870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41387175 41387357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41388096 41388197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41388681 41388821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCTTCTAAGAAGTTGGGGACAGATGTTCATGGGACTTTCAGTTACCTTGACGATGTCCCATTTAAGA
TAGGAGACAAATTCAAAACACCAGCGAAAGTGGGTCTGCCTATTGGCTTCTCCTTGCCTGACTGCTTACA
GGTTGTCAGAGAGATGCAGTATGACTTCTCCTTGGAAAAGAAAACCATTGAGTGGGCTGAAGATATTAAA
CTAATCCAAGAAGCTCAGCGGGAAGCAGAGCGGAAGGCCGAGGAAGCAGAAGCTAAAGTGAATTCCAAGA
GTGGTCCAGAGGGTGACAGCAAAGTGAGCTTCCCCAAGACTCACAATACAGCCACAATGCCACCTCCTAT
TAACCCCATCCTTGCCAGCTTACAGCACAACAACATCCTCACTCCAACTCGGGTCAGCAGTAGTGCCACA
AAGCAGAAAGTTCTCAGCCCACCCCACACAAAGGCAGACTTCAATCCTGCTGACTTCGAGTGTGAAGAGG
ACCCATTTGATAATCTGGAGTTAAAAACCATTGATGAGAAGGAAGAGCTGAGAAACATTCTGGTAGGAAC
CACTGGACCCATAATGGCTCAGTTACTGGACAGTAACACAGCCCGGGGAAGCTCGGGGGCTGTGTTACAG
GATGAGGAGGTCTTGGCATCCTTGGAGCAGGCAACCTTAGACTTCAAGCCTCTTCATAAACCCAATGGCT
TTATAACCTTACCACAGTTGGGCAACTGTGAAAAGATGTCGCTGTCTTCCAAAGTGTCCCTCCCCCCTAT
TCCTACAGTAAGCAATATCAAATCTCTCTCCTTCCCCAAACTTGACTCTGATGACAGCAATCAGAAGACA
GTCAAGCTTGCGAGCACTTTCCATAGCACATCCTGCCTCCGAAGTGGCGCATCCCGGAGTCTCCTAAAGC
CTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGGACCACACTCTTGGGCTTTCAGCTTTGAACTTGAA
CAGTGGCACAGAGGTGCCAACACTGACATCCTCCCAGATGCCTTCCCTGTCTAGCGTGTCTGTGTGTACA
GAAGAATCATCACCTCCAGATCCATGTCCCACAGTAACCCCTCTAAATTTCTCAGTGTCACAAGTGCCCA
ACATGCCTAGCTGTCCCCAGGCCTATTTGGAACTGCAGGCACTGTCTCCGAGTGAGCGGCAATGTGTAGA
GACAGTAGTCAACATGGGCTACTCATATGATTGTGTCCTGAGAGCCATGAGAAAGAAAGGAGAGAATATT
GAGCAGATTCTCGACTATCTCTTTGCACACGGACAGCTTTGTGAGAAGGGTTTTGACCCTCTTTTAGTGG
AAGAGGCTCTGGAAATGCACCAGTGTTCAGAAGAAAAGATGATGGAGTTTCTTCAGTTAATGAGCAAATT
TAAGGAAATGGGCTTTGAACTGAAAGACATTAAGGAAGTTTTGCTATTACACAACAATGACCAGGACAAT
GCTCTGGAAGACCTCATGGCCCGGGCTGGAGCCAGCTGA

Translation (502 aa):
MASKKLGTDVHGTFSYLDDVPFKIGDKFKTPAKVGLPIGFSLPDCLQVVREMQYDFSLEKKTIEWAEDIK
LIQEAQREAERKAEEAEAKVNSKSGPEGDSKVSFPKTHNTATMPPPINPILASLQHNNILTPTRVSSSAT
KQKVLSPPHTKADFNPADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDSNTARGSSGAVLQ
DEEVLASLEQATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPTVSNIKSLSFPKLDSDDSNQKT
VKLASTFHSTSCLRSGASRSLLKPSTQSSASELNGDHTLGLSALNLNSGTEVPTLTSSQMPSLSSVSVCT
EESSPPDPCPTVTPLNFSVSQVPNMPSCPQAYLELQALSPSERQCVETVVNMGYSYDCVLRAMRKKGENI
EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDN
ALEDLMARAGAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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