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Report for CCDS51280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51280.1 Public Mus musculus 4 Armh1 23 108 98 CCDS HistoryNCBI Gene:381544Re-query CCDS DB by CCDS ID:51280.1Re-query CCDS DB by GeneID:381544See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165128.8 ENSMUSP00000128613.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165128.8Link to Ensembl Protein Viewer:ENSMUSP00000128613.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165128Re-query CCDS DB by Protein ID:ENSMUSP00000128613
Original member Current member NCBI NM_001145637.1 NP_001139109.1 Accepted alive Link to Nucleotide Sequence:NM_001145637.1Link to Protein Sequence:NP_001139109.1Re-query CCDS DB by Nucleotide ID:NM_001145637Re-query CCDS DB by Protein ID:NP_001139109Link to BLAST:NP_001139109.1

Chromosomal Locations for CCDS 51280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117213515 117213630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117213717 117213798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117214164 117214241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117214336 117214465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117215293 117215365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117215439 117215561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117228294 117228378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117229828 117230024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117231755 117231921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117233292 117233360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117237636 117237841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGACCTCTGTAAAGGAGCAGGCAGCCATCAGCCGGCTCCTTAGTTTTCTGCAGGAGTGGGACAACGCCG
GCAAAGGCCTCCGAAATCAGATTCTCACCACGTTCATCAAAACCAACGAAGGCAAGACTGGCCCCGAGCT
GGAGCTGGAGTTTTCCCAGGGAGCCAGTTTGTTCCTCATACGAGTGACCACCTGGCTTAGAATCATCTAT
ATGACCGGCTTGGAACTAGAAAAGATCCTGAGGTCCATTGGCATCTTCTTATCTGCTGTGAGCAGTAATC
GGTACCTGCTTGAATTTCTTGAGATTGGAGGTGTCCTAACGCTCTTGGAAATACTTGGCGTAGAGAAGAT
CAACGAAGAGGACAAAAAGGAATCCATCAAACTACTTCAGATTATTGCAAACACTGGCAGAAAGTACAAG
GAGCTCATCTGTGAAAGCTACGGTGTGAGAGCCATAGCAGAATTTCTGGCAAAGTCTAAATCAGAAGAGA
CCCAGGAGGAAGTGCAGGTTCTGCTGGAAACGTTGGTTCATGGCAATCCCAAGTACCAGAACCAAGTATA
CAAAGGCCTGATAGCTCTGCTGCCCTGTGAGTCCCCGAAAGCCCAGCGACTGGCCCTGCAGACTCTCAAG
ACTGCCCAGTCAATAGTTGGAGCGACACACCCCAGCATCGTGGACCGTGTGCTGACAGTCCTGAGCACAG
TGCACCTGGAGGTCCAGTATGAAGCCATCGAGCTGATAAAGGACCTGATCCACTACGACGTGCGCTTGCC
TCTGCTCAAGGGCCTTGTGGCGCTGCTCATGCCACCAGTCAAGGAGACATCCAAACTGCAGGCCAAGATC
TTCAGTGACTCTTCGATTCTCCAGACCACAACCCAGTTACCCGTGTTCCTGCAGCAGGCTGCAGCTGCCA
AGACCATTGGGATCCTGGCACGCAATGACTTGAACTTGGCAGTGGAGCTGCTGAACCTGCGTGTGGTCCA
TGGCCTGATGTCGGCCATGGGTAACACTGACCACAGCAATAGCCAGAGGCTAGCCAGCCTCACACTGGAG
TACTTTGTGCAAATGTTCCCATTGGTGGAGGAACAGGTCCGCAAGTCCATGGGGGACGAACTCTACCAGC
TCTTCCTTAATGACGCCGAGATCCTGTACACAAAAATAGACAGTATTCAGGCGGACATTTTGGCAGCCAA
TAAAGTCAATGCTACCACAGACAGCTGCGAGTGCATTGACAACAGCTCCATCAGCTTCTCCACGGGCTCC
AATGATATGAATCAGAGGGGCTACACCAATGACTTTGAGAAACTTCATTCAAAGTCCAAGGAGTGA

Translation (441 aa):
MTSVKEQAAISRLLSFLQEWDNAGKGLRNQILTTFIKTNEGKTGPELELEFSQGASLFLIRVTTWLRIIY
MTGLELEKILRSIGIFLSAVSSNRYLLEFLEIGGVLTLLEILGVEKINEEDKKESIKLLQIIANTGRKYK
ELICESYGVRAIAEFLAKSKSEETQEEVQVLLETLVHGNPKYQNQVYKGLIALLPCESPKAQRLALQTLK
TAQSIVGATHPSIVDRVLTVLSTVHLEVQYEAIELIKDLIHYDVRLPLLKGLVALLMPPVKETSKLQAKI
FSDSSILQTTTQLPVFLQQAAAAKTIGILARNDLNLAVELLNLRVVHGLMSAMGNTDHSNSQRLASLTLE
YFVQMFPLVEEQVRKSMGDELYQLFLNDAEILYTKIDSIQADILAANKVNATTDSCECIDNSSISFSTGS
NDMNQRGYTNDFEKLHSKSKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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