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Report for CCDS51315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51315.1 Public Mus musculus 4 Srsf4 23 108 98 CCDS HistoryNCBI Gene:57317Re-query CCDS DB by CCDS ID:51315.1Re-query CCDS DB by GeneID:57317See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053819.5 ENSMUSP00000061474.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053819.5Link to Ensembl Protein Viewer:ENSMUSP00000061474.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053819Re-query CCDS DB by Protein ID:ENSMUSP00000061474
Original member Current member NCBI NM_020587.2 NP_065612.2 Accepted alive Link to Nucleotide Sequence:NM_020587.2Link to Protein Sequence:NP_065612.2Re-query CCDS DB by Nucleotide ID:NM_020587Re-query CCDS DB by Protein ID:NP_065612Link to BLAST:NP_065612.2

Chromosomal Locations for CCDS 51315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 131873764 131873870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131891207 131891349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131892081 131892193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131897657 131897871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131900062 131900151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131900265 131901072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGCCGCGGGTGTACATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATGTGGAGCGCTTCTTTAAGG
GCTACGGGAAGATCCTGGAGGTGGATCTGAAGAACGGGTATGGCTTTGTGGAGTTTGATGATCTGCGTGA
TGCAGACGATGCTGTTTATGAACTGAACGGCAAAGACCTGTGTGGCGAGCGAGTCATTGTTGAGCACGCT
CGAGGCCCGCGGCGGGATGGCAGCTACGGCTCGGGACGCAGTGGATATGGTTATCGAAGAAGTGGCCGAG
ATAAATACGGTCCCCCTACTCGCACAGAATACAGACTTATTGTGGAGAATTTGTCAAGTCGATGCAGCTG
GCAGGACCTAAAGGATTACATGCGTCAGGCAGGAGAAGTGACGTATGCAGATGCTCACAAGGGACGCAAA
AACGAAGGAGTGATTGAATTTGTGTCTTACTCTGATATGAAAAGAGCTTTGGAAAAGCTGGACGGAACTG
AAGTCAACGGCAGAAAAATCAGATTAGTTGAAGACAAGCCAGGTTCTAGGCGGCGCCGGTCTTACTCCAG
AAGCCGGAGTCACTCAAGGTCTCGCTCTCGAAGCAGACATTCCCGGAAGAGCAGAAGCCGGAGTGGTAGC
AGTAAAAGCAGCCATTCGAAGAGCCGGTCTCGATCCAGGTCAGGTTCCCACTCCCGCAGCAAGAGCCGCA
GTCGCAGTCAGAGCCGCAGCCGCAGTAAGAAGGAGAAAAGCCGGAGCCCCAGCAAAGACAACAAGAGCCG
CAGTCGCAGCCGCAGCCCTGACAAGAGCCGCAGTAAGAGTAAAGACCACGCCGAGGACAAGCTCCAAAAC
AACGACAGCGCCGGCAAAGCCAAGAGCCACAGCCCCAGCCGCCATGACAGTAAAAGTCGGAGCAGGAGCC
AGGAGAGGAGAGCAGAGGAGGAGAGGCGAAGGAGCGTGAGCAGGGCTCGCAGCCAGGAGAAGAGCCGCAG
CCAGGAGAAGAGCCTTCTCAAGAGCCGCAGCCGCAGCCGGAGCAAGGTGGGCAGCCGGAGCCGCAGCCGC
AGCAAGGACAAGCGGAAGGGAAGGAAGAGAAGCAGGGACGAAAGTCGAAGCCGCAGCCGCAGCAAGAGCG
AGCGCAGCCGAAAACACAGCAGCAAGCGGGACAGCAAAGTCAGTAGCAGCAGCAGCAAGAAGAAGAAGGA
CACCGACCACTCCCGGTCACCGTCCCGCTCGGTGTCAAAGGAGCGCGAACATGCCAAGGCAGAGTCTGGC
CAGAGGGAAAGCCGGGCAGAGGGTGAGAGCGAGGCCCCCAATCCAGAGCCCCGGGCCAGGTCAAGATCCA
CCTCCAAATCCAAACCCAATGTCCCGGCAGAGTCGCGCTCCAGGTCAAAATCGGCTTCAAAAACACGCTC
TCGGTCCAAGTCTCCATCCAGGTCTGCTTCCAGGTCGCCCTCCCGGTCTAGATCCAGGTCCCACTCAAGG
TCCTAA

Translation (491 aa):
MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA
RGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK
NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS
SKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQN
NDSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSR
SKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESG
QRESRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRSHSR
S


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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