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Report for CCDS51424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51424.1 Public Mus musculus 5 Magi2 23 108 98 CCDS HistoryNCBI Gene:50791Re-query CCDS DB by CCDS ID:51424.1Re-query CCDS DB by GeneID:50791See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088516.9 ENSMUSP00000085872.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088516.9Link to Ensembl Protein Viewer:ENSMUSP00000085872.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088516Re-query CCDS DB by Protein ID:ENSMUSP00000085872
Original member Current member NCBI NM_001170746.1 NP_001164217.1 Accepted alive Link to Nucleotide Sequence:NM_001170746.1Link to Protein Sequence:NP_001164217.1Re-query CCDS DB by Nucleotide ID:NM_001170746Re-query CCDS DB by Protein ID:NP_001164217Link to BLAST:NP_001164217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164217.1 1275 Q9WVQ1-1 1275 100% 0 0

Chromosomal Locations for CCDS 51424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 19227289 19227589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19678653 19678769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20065552 20065671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20195021 20195233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20215319 20215529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20228372 20228451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20358914 20358971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20389070 20389191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20391279 20391461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20465576 20466214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20528289 20528320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20534337 20534526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20543585 20543626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20550207 20550298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20561154 20561346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20569106 20569354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20600778 20600963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20602347 20602521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20609264 20609459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20611045 20611188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20651055 20651193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20661264 20661352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20702070 20702126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3828 nt):
ATGTCCAAAAGCTTGAAAAAGAAAAGCCACTGGACTAGCAAAGTCCACGAGAGTGTCATTGGCAGGAACC
CGGAGGGCCAGCTGGGCTTTGAACTGAAGGGGGGCGCGGAAAACGGACAGTTCCCCTACCTGGGGGAGGT
GAAGCCGGGCAAGGTGGCCTATGAAAGCGGCAGCAAGTTGGTGTCCGAGGAGCTGCTGCTGGAGGTGAAC
GAGACCCCCGTGGCGGGGCTCACCATCAGGGACGTTCTGGCCGTGATCAAACACTGCAAGGACCCCCTCC
GGCTCAAGTGTGTCAAGCAAGGAGGAATTGTTGATAAAGACCTTCGTCACTACCTCAACCTAAGATTTCA
GAAGGGTTCTGTTGACCATGAACTACAGCAAATCATCCGTGACAACCTCTACCTCCGCACAGTGCCATGC
ACCACAAGGCCACATAAGGAGGGTGAGGTCCCTGGAGTGGACTACATTTTCATAACCGTTGAGGAGTTTA
TGGAATTGGAGAAAAGTGGTGCTCTCCTAGAAAGCGGGACCTATGAAGACAACTACTACGGTACCCCGAA
GCCTCCAGCTGAACCAGCACCATTATTAAATGTAACAGACCAGATACTTCCGGGAGCTACTCCAAGTGCT
GAGGGGAAGCGGAAAAGAAATAAGTCAGTGACCAACATGGAGAAAGCAAGTATAGAGCCTCCAGAGGAGG
AAGAAGAAGAAAGGCCTGTAGTCAATGGAAACGGCGTGGTCATAACCCCAGAATCCAGTGAACATGAAGA
CAAAAGTGCAGGTGCCTCAGGGGAGACACCCTCCCAGCCTTACCCTGCACCCGTGTACAGCCAGCCCGAA
GAGCTCAAGGACCAGATGGACGATACAAAGCCAACAAAGCCTGAGGAGAACGAGGACTCTGATCCATTGC
CTGATAACTGGGAAATGGCCTACACAGAGAAGGGGGAAGTCTACTTCATTGACCATAACACAAAGACAAC
ATCATGGCTGGATCCGCGACTTGCGAAAAAGGCTAAACCTCCAGAAGAGTGCAAAGAAAATGAGCTTCCA
TATGGCTGGGAAAAAATCGATGATCCTATATATGGCACTTACTATGTTGACCACATAAATAGAAGAACAC
AGTTTGAAAACCCTGTCCTGGAAGCAAAAAGGAAGCTACAGCAACATAACATGCCCCACACAGAACTTGG
AGCAAAGCCCCTGCAGGCCCCAGGTTTCCGAGAAAAGCCACTCTTCACCCGGGATGCATCCCAGTTGAAG
GGAACGTTCCTCAGCACCACCCTCAAAAAGAGCAACATGGGCTTTGGGTTTACCATCATTGGTGGAGACG
AGCCGGATGAGTTTCTACAGGTGAAAAGTGTGATCCCGGATGGGCCTGCCGCACAGGATGGGAAAATGGA
GACAGGTGATGTCATTGTCTATATTAATGAAGTTTGTGTCCTTGGACACACTCATGCAGATGTTGTCAAA
CTTTTCCAGTCTGTTCCTATTGGTCAGAGTGTCAACTTGGTGTTGTGTCGTGGCTACCCTTTGCCCTTTG
ACCCTGAAGATCCTGCTAACAGCATGGTGCCACCCCTTGCAATAATGGAGAGGCCACCTCCGGTGATGGT
CAATGGAAGACATAACTATGAAACATACTTGGAATACATTTCTCGGACCTCACAGTCGGTCCCAGATATT
ACAGACCGGCCACCTCATTCTTTGCACTCCATGCCAGCTGACGGCCAGCTAGATGGCACGTATCCACCAC
CCGTCCATGACGACAATGTGTCTATGGCTTCGTCTGGAGCCACTCAAGCTGAACTTATGACCTTAACCAT
TGTGAAAGGTGCCCAGGGATTTGGCTTTACTATTGCCGACAGTCCCACGGGACAGCGGGTGAAACAAATC
CTTGACATTCAGGGATGCCCTGGGCTGTGTGAAGGAGACCTCATTGTTGAGATCAACCAACAGAATGTAC
AGAACCTGAGCCATACAGAAGTAGTGGATATACTTAAGGACTGCCCCGTTGGAAGTGAGACTTCTTTAAT
CATCCATCGAGGAGGTTTCTTTTCTCCATGGAAAACTCCAAAGCCTATGATGGACCGATGGGAGAACCAA
GGCAGTCCACAAACAAGTTTATCTGCTCCGGCCGTCCCACAGAACCTGCCCTTCCCACCTGCCCTTCACA
GGAGCTCCTTTCCTGATTCAACAGAGGCCTTTGACCCACGGAAGCCTGACCCATATGAGCTCTACGAGAA
ATCGAGAGCCATTTATGAAAGTAGGCAACAAGTGCCACCCAGGACCAGTTTTCGAATGGATTCCTCTGGT
CCAGATTATAAGGAACTGGATGTTCACCTTCGGAGGATGGAGTCTGGATTTGGCTTTAGAATCCTTGGGG
GAGATGAACCTGGACAGCCTATTTTGATCGGAGCCGTCATTGCCATGGGCTCAGCTGACAGAGACGGCCG
TCTACACCCAGGAGATGAGCTTGTCTATGTCGATGGGATCCCAGTGGCTGGCAAGACCCACCGCTATGTC
ATCGACCTCATGCACCACGCGGCCCGCAATGGGCAGGTTAACCTCACTGTGAGAAGAAAGGTGCTATGTG
GAGGGGAGCCCTGCCCAGAGAATGGGAGGAGTCCAGGCTCTGTATCAACTCACCACAGCTCTCCGCGCAG
TGACTATGCCACCTACTCCAACAGCAACCACGCCGCCCCCAGCAGCAATGCCTCACCTCCTGAAGGCTTT
GCCTCACACAGCTTGCAGACCAGTGATGTGGTCATTCACCGCAAAGAAAACGAAGGGTTTGGCTTCGTCA
TCATCAGCTCTCTGAACAGGCCTGAGTCTGGAGCCACCATAACTGTGCCCCATAAAATTGGACGAATCAT
TGATGGGAGCCCTGCAGATCGCTGTGCCAAACTCAAAGTGGGCGACCGTATCTTAGCAGTCAACGGCCAG
TCTATCATCAACATGCCTCACGCTGACATTGTGAAGCTCATCAAGGACGCCGGTCTCAGTGTCACCCTTC
GCATCATTCCTCAGGAGGAGCTCAACAGCCCAACATCAGCACCCAGTTCAGAGAAACAGAGCCCCATGGC
CCAGCAGCACAGCCCTCTGGCCCAGCAGAGTCCTCTGGCCCAGCCAAGCCCCGCCACCCCCAACAGCCCA
GTCGCACAGCCAGCTCCTCCCCAACCTCTCCAGCTGCAAGGACACGAAAATAGTTACAGGTCAGAAGTTA
AAGCGAGGCAAGATGTGAAGCCAGACATCCGGCAGCCTCCCTTCACAGACTACAGGCAGCCCCCGCTGGA
CTACAGGCAGCCCCCGGGAGGAGACTACTCACAGCCCCCACCCTTGGACTACAGGCAGCACTCTCCAGAC
ACCAGGCAGTACCCTCTGTCAGACTACAGGCAGCCACAGGATTTTGATTATTTCACTGTGGACATGGAGA
AAGGAGCCAAAGGATTTGGATTCAGCATTCGTGGAGGAAGGGAATACAAGATGGATCTGTATGTGTTGAG
ATTGGCAGAGGATGGGCCAGCCATAAGGAACGGCAGGATGAGGGTAGGAGATCAGATCATTGAAATAAAT
GGGGAAAGCACACGAGACATGACCCACGCCAGAGCAATAGAACTCATCAAGTCTGGAGGAAGAAGAGTGC
GGCTGCTGCTGAAGAGAGGCACGGGGCAGGTCCCGGAGTATGGAATGGTACCTTCCAGCCTCTCCATGTG
CATGAAAAGTGACAAGCATGGGTCCCCATATTTCTACTTACTGGGCCACCCTAAAGACACGACGAACCCC
ACGCCTGGAGTGCTGCCGCTGCCGCCGCCCCAGGCCTGCCGGAAGTAG

Translation (1275 aa):
MSKSLKKKSHWTSKVHESVIGRNPEGQLGFELKGGAENGQFPYLGEVKPGKVAYESGSKLVSEELLLEVN
ETPVAGLTIRDVLAVIKHCKDPLRLKCVKQGGIVDKDLRHYLNLRFQKGSVDHELQQIIRDNLYLRTVPC
TTRPHKEGEVPGVDYIFITVEEFMELEKSGALLESGTYEDNYYGTPKPPAEPAPLLNVTDQILPGATPSA
EGKRKRNKSVTNMEKASIEPPEEEEEERPVVNGNGVVITPESSEHEDKSAGASGETPSQPYPAPVYSQPE
ELKDQMDDTKPTKPEENEDSDPLPDNWEMAYTEKGEVYFIDHNTKTTSWLDPRLAKKAKPPEECKENELP
YGWEKIDDPIYGTYYVDHINRRTQFENPVLEAKRKLQQHNMPHTELGAKPLQAPGFREKPLFTRDASQLK
GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK
LFQSVPIGQSVNLVLCRGYPLPFDPEDPANSMVPPLAIMERPPPVMVNGRHNYETYLEYISRTSQSVPDI
TDRPPHSLHSMPADGQLDGTYPPPVHDDNVSMASSGATQAELMTLTIVKGAQGFGFTIADSPTGQRVKQI
LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPVGSETSLIIHRGGFFSPWKTPKPMMDRWENQ
GSPQTSLSAPAVPQNLPFPPALHRSSFPDSTEAFDPRKPDPYELYEKSRAIYESRQQVPPRTSFRMDSSG
PDYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV
IDLMHHAARNGQVNLTVRRKVLCGGEPCPENGRSPGSVSTHHSSPRSDYATYSNSNHAAPSSNASPPEGF
ASHSLQTSDVVIHRKENEGFGFVIISSLNRPESGATITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQ
SIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPTSAPSSEKQSPMAQQHSPLAQQSPLAQPSPATPNSP
VAQPAPPQPLQLQGHENSYRSEVKARQDVKPDIRQPPFTDYRQPPLDYRQPPGGDYSQPPPLDYRQHSPD
TRQYPLSDYRQPQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN
GESTRDMTHARAIELIKSGGRRVRLLLKRGTGQVPEYGMVPSSLSMCMKSDKHGSPYFYLLGHPKDTTNP
TPGVLPLPPPQACRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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