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Report for CCDS51501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51501.1 Public Mus musculus 5 Sel1l3 23 108 98 CCDS HistoryNCBI Gene:231238Re-query CCDS DB by CCDS ID:51501.1Re-query CCDS DB by GeneID:231238See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031090.7 ENSMUSP00000031090.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031090.7Link to Ensembl Protein Viewer:ENSMUSP00000031090.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031090Re-query CCDS DB by Protein ID:ENSMUSP00000031090
Original member Current member NCBI NM_172710.3 NP_766298.2 Accepted alive Link to Nucleotide Sequence:NM_172710.3Link to Protein Sequence:NP_766298.2Re-query CCDS DB by Nucleotide ID:NM_172710Re-query CCDS DB by Protein ID:NP_766298Link to BLAST:NP_766298.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766298.2 1137 Q80TS8-1 1137 100% 0 0

Chromosomal Locations for CCDS 51501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53108035 53108174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53116163 53116235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53116322 53116424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53117039 53117166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53121750 53121859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53123167 53123251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53123386 53123476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53131794 53131877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53135773 53135900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53137786 53137962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53139808 53139870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53144042 53144182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53145435 53145554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53154171 53154350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53155553 53155764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53170357 53170497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53172574 53172706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53174737 53174869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53181722 53181780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53184764 53184879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53185952 53186073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53187956 53188082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53199901 53200471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53213130 53213306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3414 nt):
ATGCAGTGGCGCGGCGCGGGGCTTTGGTGGCCACGGCGGCGACAGCAGCAGCAGCAGCAGCAGCCCCCGC
CGCCCGCTTTCGGTCCCCCGGCCGCAGCCATGGTCCCCCCGAGCCGCGGTGTCTCCCCGGGCCTCGGCGG
CCGCCCTACCAGCGCATTGCTCTTTCTCTGCTACCTGAATTTTGTGCCATCGTTGGGCAGGCAGACTTCC
CTGACGACATCAGTGCTGCCCAGGACAGAACAGAGCACAACGTATGCAGACTTTATTTATTTTACTGCCT
TTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCCGTGGAGTATTTATGCTCTCAGCCTTGTGTTGTCCA
TTTGGAGGCGGTTGTCTCCTCCGAGTTCAGAAGCAGCATCCCCGTGTACAAGAAGAGGTGGAGGAATGAG
AAGCATCTTCACACCAGCAGGACGCAGACAGTGCACGTGAAGTTCCCGAGCATCATGGTGTACAGGGATG
ACTATTTGATCAGACACCCCATCTCGGTGTCCACGGTGATTCTCCGAGCCTGGATTACTCACTGGCACAG
CGGCGGGGGCTTGAACGTCCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCGAAGAATTACACCCTGCTG
CAGACGGTCCCGCCTTTTGAACGGCCTTTCAAAGATCATCAGGTGTGCCTGGAGTGGAACATGGACTATC
TCTGGAGCCTCTGGGCCAATAGGATCCCACAGTGTCCTCTGGAAAGTGATGCAGTTGCCCTCCTCAGCTT
CCCCTATGCTTCCAGCGGAGAAAACACAGGCATCGTGAAGAAGCTCCAAAATTTCCAGAACAGAGAGCTA
GAGGCCACTCGAAGCCAGCGCGTGGACTACCCCATGGTCACCATTTCACTGTGGCTTTATTTACTCCATT
ATTGCGAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTGT
GTTTCTTACGGAAGACGGCAGTTTGCACATTCAAATGCATCTCGTCAAAGGAGAAGACCTGGCTGTAAAA
ACCAAGTTCACCATCCCATTGAAGGAGTGGTGCCGACTGGATATCTCGTTCAATGGAGGCCAGATAGTGG
TCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTAGCTTCCATGAAGACTTCTA
TTATAACGACACAGCTGGCTACTTCATTATTGGAGGGAGCAGGTACGTGGCCGGCATCGAAGGGTTTTTT
GGACCGGTGAAATACTATCGCCTCCGCAGCCTACACCCGGCACAGGTTCTTAATCCCTTCCTTGAGAAGG
AACTGGCTGAACAAATCAAGCTATACTATGAGCGGTGTACTGAGGTCCAGGATATAATATCCTCGTATGC
TGCAACAGTCCAGGTTGGGGGTGAGAGGCGAGAGACATGTGACTTCCATAACTCCTACCTGGACCTCAAG
CGCAAGTATGGGAGAGCCGAGGTGTGCAGAGGCTTGCCCTGGGAGAAGGAACTGAGAGACAGGCACCCCA
GCTTGTTCCAGAGCCTGCTGCAAATGGACCTGCTGACCGTGCCATGGAACCAAAATGACTCCGTATTAGA
AATCGGTGCAAGGATATTTGAGAAGGCTGTAAAGAGACTCTCTGGCGTTGATGGCCTTCACCAAATTAGC
TCTGCCATCCCCTTTCTGATGGATTCCAGCTGCTGTGGATACCATAAAGCATCCTACTACCTCACCGTCT
TCTATGAAACTGGATTAAATGGACCTCGGGATCAGCTGCAGGGCATGCTATACAGTCTGGTTGGAGGCCA
GGGCAGTGAGAGACTGTCATCAATGAATCTTGGGTACAAACACTACCAGGGTGTTGACAGCTACCCACTG
GACTGGGAACTGTCCTATGCCTACTACAGCAACATTGCTACAAAGACACCCCTTGATCAGCACACACTGC
AGGGAGACCAGGCATATGTTGAAACTATTAGGCTCAAAGATGATGAAATACTCAAAGTCCAAACCAAAGA
AGATGGCGATGTCTTTATGTGGCTGAAGCACGAAGCCACCCGTGGCAACGCAGCAGCACAGCAACGATTG
GCTCAGATGCTCTTCTGGGGACAGCAAGGGGTGGCCAAGAACCCTGAGGCCGCTATCGAGTGGTACGCGA
AGGGGGCCCTGGAGACGGAGGATCCGGCGCTGATATATGACTACGCCATTGTGCTATTCAAGGGTCAAGG
AGTTAAAAAGAACAGACGGCTCGCCTTAGAGCTCATGAAGAAAGCTGCTTCCAAGGGATTGCATCAGGCT
GTCAATGGCCTGGGATGGTATTACCACAAATTCAGGAAAAATTATGCCAAAGCAGCCAAGTACTGGTTAA
AGGCAGAAGAAATGGGGAACCCAGATGCGTCTTACAATCTTGGGGTCCTGTATTTGGATGGCATTTTCCC
GGGAGTTCCTGGAAGGAATCTGACACTGGCTGGTGAATACTTCCATAAAGCTGCACAAGGTGGACACATC
GAAGGGACATTGTGGTGTTCCCTTTACTATATCACCGGCAACCTGGAGACCTTCCCTAGAGATCCAGAGA
AAGCTGTTGTATGGGCAAAGCATGTGGCCGAAAAAAACGGATACCTGGGACACGTCATCCGCAAAGGTCT
CAACGCCTACCTGGAGGGCCTGTGGCACGAAGCTTTGCTGTATTATGTTTTAGCAGCAGAAACTGGAATT
GAAGTGTCACAGACAAATTTAGCACACATCTGCGAGGAGAGGCCAGACCTGGCTGGGAGATACTTGGGCG
TTAATTGTGTTTGGCGATACTATAATTTCTCTGTTTTTCAAATCGATGCTCCTTCATTTGCGTATCTGAA
AATGGGAGACCTTTACTACTATGGCCATCAAAACCAGTCCCAAGATCTGGAGCTGTCTGTGCAGATGTAC
GCCCAAGCAGCCCTGGATGGAGACTCCCAGGGATTTTTCAACCTCGCCGCACTGATAGAGGAAGGTGCTG
TCATCCCACACCACATCCTGGAGTTCTTGGAAATCGACCCTTCACTCCATTCCAGTAACACCTCCATACT
CCAGGAGCTCTACGAAAGGTGCTGGAGTCTCAGTAATGAGGAGTCCCTTAGCCCCTGCTCCTTGGCCTGG
CTTTACCTTCATCTTCGGCTTCTCTGGGGTGCCGTTCTGCACTCTGCCCTGATCTACTTCCTGGGAACCT
TCCTGCTTTCCGTGGTGATCGCCTGGATGGTGCTTTATCTCCAGTATATCTCAGCCAGTGGCTCCTCTCC
AGCACCAGCCTGGGTCTCGGCAGACCCCACCTCATCCACCCCAAGTCCAGCTGTGCCTCCGGCTGCAGAT
GCCTCCGACCACGACCCACCCATGATGGCTAACGGCCCTGAGCCTCGTGGGTGA

Translation (1137 aa):
MQWRGAGLWWPRRRQQQQQQQPPPPAFGPPAAAMVPPSRGVSPGLGGRPTSALLFLCYLNFVPSLGRQTS
LTTSVLPRTEQSTTYADFIYFTAFEGSVRNVSEVSVEYLCSQPCVVHLEAVVSSEFRSSIPVYKKRWRNE
KHLHTSRTQTVHVKFPSIMVYRDDYLIRHPISVSTVILRAWITHWHSGGGLNVRGEENLLHAVAKNYTLL
QTVPPFERPFKDHQVCLEWNMDYLWSLWANRIPQCPLESDAVALLSFPYASSGENTGIVKKLQNFQNREL
EATRSQRVDYPMVTISLWLYLLHYCEASLCGILYFVDSNEMYGTPSVFLTEDGSLHIQMHLVKGEDLAVK
TKFTIPLKEWCRLDISFNGGQIVVTASIGWDLKSYHNQTISFHEDFYYNDTAGYFIIGGSRYVAGIEGFF
GPVKYYRLRSLHPAQVLNPFLEKELAEQIKLYYERCTEVQDIISSYAATVQVGGERRETCDFHNSYLDLK
RKYGRAEVCRGLPWEKELRDRHPSLFQSLLQMDLLTVPWNQNDSVLEIGARIFEKAVKRLSGVDGLHQIS
SAIPFLMDSSCCGYHKASYYLTVFYETGLNGPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGVDSYPL
DWELSYAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEILKVQTKEDGDVFMWLKHEATRGNAAAQQRL
AQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKGQGVKKNRRLALELMKKAASKGLHQA
VNGLGWYYHKFRKNYAKAAKYWLKAEEMGNPDASYNLGVLYLDGIFPGVPGRNLTLAGEYFHKAAQGGHI
EGTLWCSLYYITGNLETFPRDPEKAVVWAKHVAEKNGYLGHVIRKGLNAYLEGLWHEALLYYVLAAETGI
EVSQTNLAHICEERPDLAGRYLGVNCVWRYYNFSVFQIDAPSFAYLKMGDLYYYGHQNQSQDLELSVQMY
AQAALDGDSQGFFNLAALIEEGAVIPHHILEFLEIDPSLHSSNTSILQELYERCWSLSNEESLSPCSLAW
LYLHLRLLWGAVLHSALIYFLGTFLLSVVIAWMVLYLQYISASGSSPAPAWVSADPTSSTPSPAVPPAAD
ASDHDPPMMANGPEPRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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