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Report for CCDS51522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51522.1 Public Mus musculus 5 Lnx1 23 108 98 CCDS HistoryNCBI Gene:16924Re-query CCDS DB by CCDS ID:51522.1Re-query CCDS DB by GeneID:16924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113531.8 ENSMUSP00000109159.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113531.8Link to Ensembl Protein Viewer:ENSMUSP00000109159.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113531Re-query CCDS DB by Protein ID:ENSMUSP00000109159
Original member Current member EBI ENSMUST00000153543.4 ENSMUSP00000121094.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153543.4Link to Ensembl Protein Viewer:ENSMUSP00000121094.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000153543Re-query CCDS DB by Protein ID:ENSMUSP00000121094
Original member Current member NCBI NM_001159578.1 NP_001153050.1 Accepted alive Link to Nucleotide Sequence:NM_001159578.1Link to Protein Sequence:NP_001153050.1Re-query CCDS DB by Nucleotide ID:NM_001159578Re-query CCDS DB by Protein ID:NP_001153050Link to BLAST:NP_001153050.1
Original member Current member NCBI NM_001359074.1 NP_001346003.1 Accepted alive Link to Nucleotide Sequence:NM_001359074.1Link to Protein Sequence:NP_001346003.1Re-query CCDS DB by Nucleotide ID:NM_001359074Re-query CCDS DB by Protein ID:NP_001346003Link to BLAST:NP_001346003.1

Chromosomal Locations for CCDS 51522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74597275 74597410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74597776 74597934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74606037 74606262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74607737 74607905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74610677 74610811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74619974 74620345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74623482 74623684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74627348 74627500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74628120 74628276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCAACGACGCTCTCCCCAGAGGTTTCTGCAGCCGCCACCATCTCTTTAATGACAGATGAGCCTGGCC
TAGACAACCCTGCCTACGTGTCCTCGGTGGAGGATGGTGAGCCAGTAGCCAACTCCTCAGACTCTGGCCG
GAGCAACCGGACTAGGGCACGGCCCTTTGAGCGCTCCACTATGAGAAGCCGGTCTTTCAAGAAGATCAAC
CGAGCTCTAAGTGCTCTCCGGAGGACGAAGAGCGGGAGTGTCGTTGCCAACCATGTTGACCAGGGCAGGG
ACAACTCTGAGAACACCACTGTCCCCGAAGTCTTCCCAAGGTTGTTTCACCTGATTCCAGATGGTGAAAT
TACAAGCATCAAAATCAACAGAGCGGATCCCAGCGAAAGCCTCTCCATAAGGCTGGTGGGGGGCAGCGAG
ACGCCGCTGGTCCACATCATCATCCAGCATATTTATCGCGATGGAGTGATTGCCAGAGATGGACGGCTGC
TGCCAGGAGACATCATTCTCAAGGTCAACGGCATGGACATCAGCAATGTCCCTCATAACTATGCCGTGCG
GCTCCTGCGGCAGCCCTGCCAGGTGCTGCGGCTAACGGTGCTGCGGGAGCAGAAGTTCCGTAGCAGAAGC
AATGCGCACGTGCCGGACTCCTATGGACCTCGGGATGACAGCTTCCATGTAATCCTCAACAAAAGCAGCC
CCGAGGAGCAGCTTGGCATAAAGCTGGTGCGCCGGGTGGATGAGCCCGGCGTGTTCATCTTCAACGTGCT
AAATGGGGGTGTCGCCGACCGACACGGCCAGCTGGAGGAGAATGACCGTGTGCTGGCCATCAACGGGCAT
GACCTTCGATTTGGCAGTCCAGAGAGTGCAGCTCATCTGATTCAGGCCAGTGAAAGACGCGTCCATCTCG
TCGTGTCCCGCCAGGTTCGACAGTCCAGCCCAGACATCTTTCAAGAAGCTGGCTGGATCAGCAATGGCCA
GCAATCCCCAGGCCCAGGAGAGAGGAACACAGCTTCTAAGCCTGCAGCCACCTGTCATGAGAAGGTTGTA
AGTGTCTGGAAAGACCCCAGCGAGTCTCTCGGCATGACCGTCGGAGGGGGAGCATCCCACAGGGAATGGG
ACTTGCCCATCTATGTCATCAGTGTTGAACCCGGCGGAGTCATAAGCAGAGACGGGAGAATAAAAACAGG
TGACATTTTATTGAATGTGAATGGGATTGAGCTCACAGAGGTCAGCCGGACAGAGGCCGTTGCCATACTG
AAGAGCGCACCCTCCTCAGTGGTACTCAAAGCCTTGGAAGTCAAGGAACAGGAGGCCCAGGAAGACTGCA
GCCCAGCAGCCCTGGACTCCAACCACAACGTGACCCCGCCTGGTGACTGGTCCCCATCCTGGGTCATGTG
GCTGGAATTACCACAGTACTTATGTAACTGTAAAGATGTGATACTGCGAAGGAACACAGCTGGAAGCCTG
GGCTTCTGCATTGTGGGAGGTTATGAAGAATACAGTGGGAACAAACCTTTTTTTATCAAGTCCATTGTTG
AAGGAACACCTGCATACAATGACGGAAGAATCAGATGTGGTGACATTCTTCTCGCTGTCAACGGTAGAAG
TACATCGGGTATGATACACGCTTGCCTGGCCAGGATGCTCAAGGAACTTAAAGGGAGAATTACTCTGACC
ATTGCTTCTTGGCCTGGTACTTTTTTATAA

Translation (569 aa):
MATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSNRTRARPFERSTMRSRSFKKIN
RALSALRRTKSGSVVANHVDQGRDNSENTTVPEVFPRLFHLIPDGEITSIKINRADPSESLSIRLVGGSE
TPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRS
NAHVPDSYGPRDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGH
DLRFGSPESAAHLIQASERRVHLVVSRQVRQSSPDIFQEAGWISNGQQSPGPGERNTASKPAATCHEKVV
SVWKDPSESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIELTEVSRTEAVAIL
KSAPSSVVLKALEVKEQEAQEDCSPAALDSNHNVTPPGDWSPSWVMWLELPQYLCNCKDVILRRNTAGSL
GFCIVGGYEEYSGNKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMIHACLARMLKELKGRITLT
IASWPGTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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