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Report for CCDS51524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51524.1 Public Mus musculus 5 Lnx1 23 108 98 CCDS HistoryNCBI Gene:16924Re-query CCDS DB by CCDS ID:51524.1Re-query CCDS DB by GeneID:16924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087161.9 ENSMUSP00000084405.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087161.9Link to Ensembl Protein Viewer:ENSMUSP00000084405.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087161Re-query CCDS DB by Protein ID:ENSMUSP00000084405
Original member Current member EBI ENSMUST00000117388.7 ENSMUSP00000113035.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117388.7Link to Ensembl Protein Viewer:ENSMUSP00000113035.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117388Re-query CCDS DB by Protein ID:ENSMUSP00000113035
Original member Current member NCBI NM_001159577.1 NP_001153049.1 Accepted alive Link to Nucleotide Sequence:NM_001159577.1Link to Protein Sequence:NP_001153049.1Re-query CCDS DB by Nucleotide ID:NM_001159577Re-query CCDS DB by Protein ID:NP_001153049Link to BLAST:NP_001153049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153049.1 728 O70263-1 728 100% 0 0

Chromosomal Locations for CCDS 51524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74597275 74597410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74597776 74597934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74606037 74606262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74607737 74607905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74610677 74610811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74619974 74620345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74623482 74623684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74627348 74627500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74628120 74628361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74685396 74685787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGAACCAACCGGACCTTGCAGATGACCCAGATCCCAGTCCCGAGCCTCTGTGCATAGTGTGTGGGCAAA
ACCACTCCCCAGAGGAAAACCACTTCTACACGTACACAGAGGATGTAGATGACGACCTCATATGCCACAT
CTGTCTGCAAGCATTGCTGGACCCTCTGGACACTCCATGTGGACACACCTACTGCACCCTGTGTCTCACC
AACTTCCTGGTGGAGAAGGACTTCTGCCCTGTGGATCGAAAGCCTGTGGTTCTGCAGCACTGCAAGAAAT
CCAGTATCTTGGTCAACAAGCTTCTCAATAAGCTGTTGGTCACCTGCCCGTTCACGGAGCACTGCACTGA
GGTGCTACAGCGCTGTGATCTCCAGCATCATTTCCAGACAAGCTGCAAAGGGGCCTCCCACTATGGCCTG
ACCAAGGACAGGAAAAGGCGCTCTCAAGATGGCTGTCCTGATGGTTGCGCCAGCCTCATGGCAACGACGC
TCTCCCCAGAGGTTTCTGCAGCCGCCACCATCTCTTTAATGACAGATGAGCCTGGCCTAGACAACCCTGC
CTACGTGTCCTCGGTGGAGGATGGTGAGCCAGTAGCCAACTCCTCAGACTCTGGCCGGAGCAACCGGACT
AGGGCACGGCCCTTTGAGCGCTCCACTATGAGAAGCCGGTCTTTCAAGAAGATCAACCGAGCTCTAAGTG
CTCTCCGGAGGACGAAGAGCGGGAGTGTCGTTGCCAACCATGTTGACCAGGGCAGGGACAACTCTGAGAA
CACCACTGTCCCCGAAGTCTTCCCAAGGTTGTTTCACCTGATTCCAGATGGTGAAATTACAAGCATCAAA
ATCAACAGAGCGGATCCCAGCGAAAGCCTCTCCATAAGGCTGGTGGGGGGCAGCGAGACGCCGCTGGTCC
ACATCATCATCCAGCATATTTATCGCGATGGAGTGATTGCCAGAGATGGACGGCTGCTGCCAGGAGACAT
CATTCTCAAGGTCAACGGCATGGACATCAGCAATGTCCCTCATAACTATGCCGTGCGGCTCCTGCGGCAG
CCCTGCCAGGTGCTGCGGCTAACGGTGCTGCGGGAGCAGAAGTTCCGTAGCAGAAGCAATGCGCACGTGC
CGGACTCCTATGGACCTCGGGATGACAGCTTCCATGTAATCCTCAACAAAAGCAGCCCCGAGGAGCAGCT
TGGCATAAAGCTGGTGCGCCGGGTGGATGAGCCCGGCGTGTTCATCTTCAACGTGCTAAATGGGGGTGTC
GCCGACCGACACGGCCAGCTGGAGGAGAATGACCGTGTGCTGGCCATCAACGGGCATGACCTTCGATTTG
GCAGTCCAGAGAGTGCAGCTCATCTGATTCAGGCCAGTGAAAGACGCGTCCATCTCGTCGTGTCCCGCCA
GGTTCGACAGTCCAGCCCAGACATCTTTCAAGAAGCTGGCTGGATCAGCAATGGCCAGCAATCCCCAGGC
CCAGGAGAGAGGAACACAGCTTCTAAGCCTGCAGCCACCTGTCATGAGAAGGTTGTAAGTGTCTGGAAAG
ACCCCAGCGAGTCTCTCGGCATGACCGTCGGAGGGGGAGCATCCCACAGGGAATGGGACTTGCCCATCTA
TGTCATCAGTGTTGAACCCGGCGGAGTCATAAGCAGAGACGGGAGAATAAAAACAGGTGACATTTTATTG
AATGTGAATGGGATTGAGCTCACAGAGGTCAGCCGGACAGAGGCCGTTGCCATACTGAAGAGCGCACCCT
CCTCAGTGGTACTCAAAGCCTTGGAAGTCAAGGAACAGGAGGCCCAGGAAGACTGCAGCCCAGCAGCCCT
GGACTCCAACCACAACGTGACCCCGCCTGGTGACTGGTCCCCATCCTGGGTCATGTGGCTGGAATTACCA
CAGTACTTATGTAACTGTAAAGATGTGATACTGCGAAGGAACACAGCTGGAAGCCTGGGCTTCTGCATTG
TGGGAGGTTATGAAGAATACAGTGGGAACAAACCTTTTTTTATCAAGTCCATTGTTGAAGGAACACCTGC
ATACAATGACGGAAGAATCAGATGTGGTGACATTCTTCTCGCTGTCAACGGTAGAAGTACATCGGGTATG
ATACACGCTTGCCTGGCCAGGATGCTCAAGGAACTTAAAGGGAGAATTACTCTGACCATTGCTTCTTGGC
CTGGTACTTTTTTATAA

Translation (728 aa):
MNQPDLADDPDPSPEPLCIVCGQNHSPEENHFYTYTEDVDDDLICHICLQALLDPLDTPCGHTYCTLCLT
NFLVEKDFCPVDRKPVVLQHCKKSSILVNKLLNKLLVTCPFTEHCTEVLQRCDLQHHFQTSCKGASHYGL
TKDRKRRSQDGCPDGCASLMATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSNRT
RARPFERSTMRSRSFKKINRALSALRRTKSGSVVANHVDQGRDNSENTTVPEVFPRLFHLIPDGEITSIK
INRADPSESLSIRLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQ
PCQVLRLTVLREQKFRSRSNAHVPDSYGPRDDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGV
ADRHGQLEENDRVLAINGHDLRFGSPESAAHLIQASERRVHLVVSRQVRQSSPDIFQEAGWISNGQQSPG
PGERNTASKPAATCHEKVVSVWKDPSESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILL
NVNGIELTEVSRTEAVAILKSAPSSVVLKALEVKEQEAQEDCSPAALDSNHNVTPPGDWSPSWVMWLELP
QYLCNCKDVILRRNTAGSLGFCIVGGYEEYSGNKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGM
IHACLARMLKELKGRITLTIASWPGTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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