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Report for CCDS51596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51596.1 Public Mus musculus 5 Vmn2r10 23 108 98 CCDS HistoryNCBI Gene:22307Re-query CCDS DB by CCDS ID:51596.1Re-query CCDS DB by GeneID:22307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079163.4 ENSMUSP00000078162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079163.4Link to Ensembl Protein Viewer:ENSMUSP00000078162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079163Re-query CCDS DB by Protein ID:ENSMUSP00000078162
Original member NCBI NM_009491.3 NP_033517.3 Updated not alive Link to Nucleotide Sequence:NM_009491.3Link to Protein Sequence:NP_033517.3Re-query CCDS DB by Nucleotide ID:NM_009491Re-query CCDS DB by Protein ID:NP_033517
Current member NCBI NM_009491.4 NP_033517.3 Accepted alive Link to Nucleotide Sequence:NM_009491.4Link to Protein Sequence:NP_033517.3Re-query CCDS DB by Nucleotide ID:NM_009491Re-query CCDS DB by Protein ID:NP_033517Link to BLAST:NP_033517.3

Chromosomal Locations for CCDS 51596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108995539 108996446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108997604 108997727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108998909 108999133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109001890 109002693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109003264 109003546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109006237 109006436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGAAAAACCTGTGTGTTTTCACTCTTTCCTTTTTCCTCCTGGAGTTTTCTCTGATCTTGTGCCATTTGA
CTGAACCCATTTGCTTTTGGAGGATAAATAATAATGAAGATAATGATGGAGATTTGAGAAGTGACTGTGG
TTTTTTCCTTGCAGCAGTTGAGGGACCTACTGACGACTCTTATAATATCTCTGATCTTAGAATACCAGCA
AGAAGATATGAGTTTTTCCTAGTAATGTTTTTTGCAACTGATGAAATCAATAAGAATCCTTATCTTTTAC
CCAACATGTCTTTGATATTCCCCATTAATCATGGTCAGTGTGAAAAAACATTGGGAGATCTGGATAAAAT
ATATTCAGAAAAGAACTATACTGTGGAATTTACTGATTATATCTGTGTATCTTTTGGAACCTGTTTTATA
GCCCTTATAGGACCATCATGGAAAACATCAATAAAACTGTCAATTAATTCTGGGACACCAAGGGTTTTCT
TTGGACCATTTAATCCTAAGCTGAGTGACCATGACCAGTTTCCCTATGTCCATCAGGTAGCCACCAAGGA
CACACGTTTGTCCCATGCAATGGTCTCCTTGATGTTTCATTTTACATGGATTTGGATAGGAATGGTCATC
TCAGATGATGACCAGAGTATTCAGTTTCTATCAGACATGAGAGAAGAAATGCAAAGACATGGAATCTGTT
TAGCTTTTGTTAATATGATCCCAGAAGACATGCAGTTATATATGACAAGGGCTACAATATATGATAAACA
AATTATGGAATCAACAGCAAAGGTTGTTATGATTTATGGTGAAATGAACTCTACCTTAGAAGTTAGCTTT
AGAAGGTGGGAAGATTTAAGTATAAGGAGAATCTGGATCACAACCTCACAATGGGACGTTATCACAAATA
AAAATGATTTCAGCCTTGATTTCTTCCAAGGGACTGTCACTTTTGCACACCATGTAGGTGAAATTGCTAA
CTTTAGGAATTTCTTGCAAACAATGAACAGTGAAAAATACACAGTAAACATTTCTGAGTCTAGACTGGGG
TGGAATTATTTTAATTGTTCCATCTCTAAGAACAGCAATAAAAAGGATCATTTTACATTCAACAACACAT
TGGAATGGACAACACTGCACAAATATGACATGGTCCTAAGTGAGGAAGGCTACAATTTGTATAATGCTGT
GTATGCTGTGGCCCACACCTACCATGAACTCGTTCTTCAACAAGTAGAATCTCAGCAAATGACAGTACCC
AAAGGAACATTCACTGACTGTCAGCAGGTGTCTTCCATGCTGAAGTCCAGGATATTTACTAACCCTGTTG
GAGAACTGGTGAACATGAAGCATAGGGAAAATCAGTGTACAGAGTATGATATTTTCATCATTTGGAATTT
TCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATTTGCCTTGTTTCCAACAGAGCCAACAACTT
CATATATCTGAAGATTTGGAGTGGGCCACAGGAGGATCATCAGTACCCCCCTCCCTGTGTAGTGTAACAT
GTACTGCTGGATTCAGGAAAATTCATCAGAAACAAACAGCAGACTGCTGCTTTGATTGTGATCAGTGCCC
AGAAAATGCAGTTTCCAATGAAACAGTAGATATGGAACAGTGTATGAGGTGTCCAGATGATAAGTATGCC
AACTTAGAGAAAACCCACTGCCTCCAAAGAGCTGTGTCATTCCTGGCTTATGAAGATCCATTGGGGATGG
CTCTAGGATGCACGGCCCTGTCCTTCTCTGCCCTCACAGTTCTAGTACTAGTCACTTTTGTGAAGTACAA
GGATACACCTATTGTGAAGGCCAATAACCGCATTCTCAGCTACATCCTGCTCATCTCTCTAGTCTTCTGT
TTTCTCTGCTCATTGCTGTTCATTGGACATCCAAACCAGGCCACTTGTATCCTGCAGCAGACCACATTTG
GAGTATTTTTCACAGTGGCTATTTCTACAGTGTTGGCTAAAACAATAACTGTGCTCATGGCTTTCAAGCT
CACTACTCCAGGGAGAAGGATGAGAGGGATGCTGGCATCAGGGGCACCTAATATAGTCATTCCCATTTGT
ACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTAGTAACATCTCCTCCCTTTATTGACAGAGATATGC
AATCTGAACATGGAAAGACCATCATTATTTGCAACAAAGGCTCAGTAATTGCCTTCCACTTTGTTCTCGG
ATACTTGGGTGCCTTGGCTCTGGGGAGCTTTACTGTGGCTTTCTTGGCTAGGAACCTTCCTGACAGATTC
AATGAAGCCAAATTCTTAACCTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCCCTGTCT
ACCACAGCACCCAGGGAACGGTCATGGTGGTTGTGGAGGTTTTCTCCATCTTGGCTTCTAGTGCAGGCTT
GCTAGGGTGTATCTTTCTCCCAAAATGTTGTGTTTTATTACGTATACAAAATTCAAACTTTCTGCATAAG
TACAAACATGAATTGCATTCTTGA

Translation (847 aa):
MKNLCVFTLSFFLLEFSLILCHLTEPICFWRINNNEDNDGDLRSDCGFFLAAVEGPTDDSYNISDLRIPA
RRYEFFLVMFFATDEINKNPYLLPNMSLIFPINHGQCEKTLGDLDKIYSEKNYTVEFTDYICVSFGTCFI
ALIGPSWKTSIKLSINSGTPRVFFGPFNPKLSDHDQFPYVHQVATKDTRLSHAMVSLMFHFTWIWIGMVI
SDDDQSIQFLSDMREEMQRHGICLAFVNMIPEDMQLYMTRATIYDKQIMESTAKVVMIYGEMNSTLEVSF
RRWEDLSIRRIWITTSQWDVITNKNDFSLDFFQGTVTFAHHVGEIANFRNFLQTMNSEKYTVNISESRLG
WNYFNCSISKNSNKKDHFTFNNTLEWTTLHKYDMVLSEEGYNLYNAVYAVAHTYHELVLQQVESQQMTVP
KGTFTDCQQVSSMLKSRIFTNPVGELVNMKHRENQCTEYDIFIIWNFPQGLGLKVKIGSYLPCFQQSQQL
HISEDLEWATGGSSVPPSLCSVTCTAGFRKIHQKQTADCCFDCDQCPENAVSNETVDMEQCMRCPDDKYA
NLEKTHCLQRAVSFLAYEDPLGMALGCTALSFSALTVLVLVTFVKYKDTPIVKANNRILSYILLISLVFC
FLCSLLFIGHPNQATCILQQTTFGVFFTVAISTVLAKTITVLMAFKLTTPGRRMRGMLASGAPNIVIPIC
TLIQLVLCGIWLVTSPPFIDRDMQSEHGKTIIICNKGSVIAFHFVLGYLGALALGSFTVAFLARNLPDRF
NEAKFLTFSMLVFCSVWITFLPVYHSTQGTVMVVVEVFSILASSAGLLGCIFLPKCCVLLRIQNSNFLHK
YKHELHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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