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Report for CCDS51603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51603.1 Public Mus musculus 5 Vmn2r17 23 108 98 CCDS HistoryNCBI Gene:384221Re-query CCDS DB by CCDS ID:51603.1Re-query CCDS DB by GeneID:384221See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171841.2 ENSMUSP00000131450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171841.2Link to Ensembl Protein Viewer:ENSMUSP00000131450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171841Re-query CCDS DB by Protein ID:ENSMUSP00000131450
Original member Current member NCBI NM_001104628.1 NP_001098098.1 Accepted alive Link to Nucleotide Sequence:NM_001104628.1Link to Protein Sequence:NP_001098098.1Re-query CCDS DB by Nucleotide ID:NM_001104628Re-query CCDS DB by Protein ID:NP_001098098Link to BLAST:NP_001098098.1

Chromosomal Locations for CCDS 51603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 109420013 109420218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109427035 109427314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109427751 109428557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109429378 109429602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109434265 109434388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109452480 109453387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGAAGAAGCTGTGTGTTTTCACTATTTCCTTCTTGCTCATGACATTTTCTCTCTTCTTGTGCAGTTTGA
CTGGACCCAGTTGCTTTTGGCGTATCCAGAATAATGAAGATAATGATGGAGATTTGCATCGTGACTGTGG
TTTTTTTCTTTTCACATCTGAGGAACCTATAAAAGAAGATTTTTACCATTTTTGTATTGATTTTAGAATA
CCAGCAAGGAGATATGAGGTTTTTTTGGTAATGTTTTTTGCTACTGATGAGATCAACAGGAATCCTTATC
TTTTACCAAACATGTCTTTGATTTTCTGCCTCATTGTTGGCATGTGTGGAGATACATTGGGATACCTGGA
AGAAACACATTCACCAAACAATACTTGGAATAGTATTAATTATAACTGTGAAATAAGGCCAATATGTGAT
ATAGAACTTACAGGGCCATCATGGACAACATCCGTAAAACTGGCAATTAATTCTAGAAAACCAAAGGTTT
TCTTCGGACCATTTAATTCTCACCTGAGTGACCATGACCAGTTTCCCTATATCTATCAGGTAGCAACCAA
GGACACACATTTGTCCCATGGCATGGTCTCCTTGATGCTTCATTTTAGATGGACTTGGATAGGACTTGTC
ATCTCAGATGATGATCAGAGTATTCAGTTTCTCTCAGACTTGAGAGAAGCAATGCAAAGACATGGAATCT
GTTTAGCTTTTGTGAATATGATCCCAGAAAACATGCAGATATATATGACAAGGGGTAAGATATATGACAA
ACAAATTATGACATCATCAGCCAAGGTTGTTATCATTTATGGTGAAATGAACTCTACTCTAGAAGTCAGC
TTTAGAAGATGGGCATATTTATGTGCAAGGAGAATCTGGATCACAACCTCACAATGGGATGTCATCACAA
ATAAAAGAGATTTCAGCTTTGATTTCTTCCATGGGACTGTCACTTTTGCACACCACAATGGTGAAATTGT
TATATTTAGGAATTTTTTGCAAACAGTGAACACTTCCAAGTACCCATTAGACATTTCTCAGACTATGCAG
GAGTGGAATTATTTTAATTGTTCAATCTCTAAGAACAGCAACAGCAAAATGGATCATTTTACATTCAACA
ACACATTGGAATGGACAGCACTGCAAAAATTAAACATGGTCCTGAGTGAAGAAGGCTACAATTTGTATAA
TGCTGTATATGCTGTGGCCCACACATACCATGAACTCATTCTCCAACAAGTAGAGTTTCAGAAAATGGCA
GAACCCAAAGGAATATTCACTGACTGTCAGCAGGTGGCTTCCTTGCTGAAGACCAGAGTATTTACTAACC
CTGTTGGAGAACTGGTGAACATGAAGCATAGGGAAAATCAGTGTGCAGATTATGACATTTTCAACATTTG
GAATTTTCCACAAGGCCTTGGATTAAGAGTGAAAATAGGAAGCTATTATCCTTGCTTCCCACAAAATCAA
CAACTTCATATATCTGAAGATTTGGAGTGGGCCACAGGAGGAACGTCGGTTCCCACCTCCATGTGTAGTG
TGACATGTACTGCTGGATTCAGAAAAATTCATCAGAAACAAACAGCAGACTGCTGCTTTGACTGTGCCCA
TTGCCCAGAAAATGAGGTTTCCAATGAGACAGCAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAG
TATGCTAACTTAGAGCAAACCCACTGCCTTCAAAGAGCTGTGTCATTCCTGGCTTATGAAGATCCACTGG
GGATGGCTCTAGGCTGCATGGCCCTGTGCTTCTCTGCCCTCACACTACTAGTATTTTTCACTTTTGTGAA
GTACAAGGATACTCCCATTGTGAAAGCCAATAACCGCATTCTCAGCTATATCCTGCTCATCTCTCTAGTC
TTCTGTTTTCTCTGCTCATTGCTCTTCATTGGACATCCCAACCAGGCCACCTGCATCCTACAGCAGACCA
CATTTGGAGTATTTTTCACAGTAGCCATTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTT
CAAGCTCACTGCTCCAGGAAGAAGGGTGAGAGGGATGTTGGTAGCAGGGGCACCTAACTTGGCCATTCCC
ATTTGTACCCTAATCCAAATTGTTCTTTGTGGAATCTGGTTAGTAACATCTCCTCCTTTTATTGGTAGAG
ATACAAAATCTGAACATGGGAAGACCATCCTTATTTGCAACAAAGGCTCAGTCATTGCTTTCCACTTTGT
CCTGGGATACTTGGGCTCCTTGGCTCTGGGGAGCTTCACTGTAGCTTTCTTGGCTAGGAACCTTCCTGAC
AGATTCAATGAAGCCAAGTTCCTAACGTTCAGCATGCTGATGTTCTGCAGTGTCTGGATCACCTTCCTCC
CTGTCTACCACAGTACCAGGGGAAAGGCCATGGTAGTTGTGGAGGTCTTCTCCATCTTGGCTTCTAGTGC
AGCATTGCTAGGGTTTATCTTTGTCCCAAAGTGTTATGTTATCTTAGTTAAATCAGATTCAAATTTTCGG
GAGAAGTACAAAAATAAATTTCATTATTGA

Translation (849 aa):
MKKLCVFTISFLLMTFSLFLCSLTGPSCFWRIQNNEDNDGDLHRDCGFFLFTSEEPIKEDFYHFCIDFRI
PARRYEVFLVMFFATDEINRNPYLLPNMSLIFCLIVGMCGDTLGYLEETHSPNNTWNSINYNCEIRPICD
IELTGPSWTTSVKLAINSRKPKVFFGPFNSHLSDHDQFPYIYQVATKDTHLSHGMVSLMLHFRWTWIGLV
ISDDDQSIQFLSDLREAMQRHGICLAFVNMIPENMQIYMTRGKIYDKQIMTSSAKVVIIYGEMNSTLEVS
FRRWAYLCARRIWITTSQWDVITNKRDFSFDFFHGTVTFAHHNGEIVIFRNFLQTVNTSKYPLDISQTMQ
EWNYFNCSISKNSNSKMDHFTFNNTLEWTALQKLNMVLSEEGYNLYNAVYAVAHTYHELILQQVEFQKMA
EPKGIFTDCQQVASLLKTRVFTNPVGELVNMKHRENQCADYDIFNIWNFPQGLGLRVKIGSYYPCFPQNQ
QLHISEDLEWATGGTSVPTSMCSVTCTAGFRKIHQKQTADCCFDCAHCPENEVSNETADMEQCVRCPDDK
YANLEQTHCLQRAVSFLAYEDPLGMALGCMALCFSALTLLVFFTFVKYKDTPIVKANNRILSYILLISLV
FCFLCSLLFIGHPNQATCILQQTTFGVFFTVAISTVLAKTITVVMAFKLTAPGRRVRGMLVAGAPNLAIP
ICTLIQIVLCGIWLVTSPPFIGRDTKSEHGKTILICNKGSVIAFHFVLGYLGSLALGSFTVAFLARNLPD
RFNEAKFLTFSMLMFCSVWITFLPVYHSTRGKAMVVVEVFSILASSAALLGFIFVPKCYVILVKSDSNFR
EKYKNKFHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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