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Report for CCDS51638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51638.1 Public Mus musculus 5 Trafd1 23 108 98 CCDS HistoryNCBI Gene:231712Re-query CCDS DB by CCDS ID:51638.1Re-query CCDS DB by GeneID:231712See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042312.13 ENSMUSP00000047475.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042312.13Link to Ensembl Protein Viewer:ENSMUSP00000047475.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042312Re-query CCDS DB by Protein ID:ENSMUSP00000047475
Original member Current member NCBI NM_001163470.1 NP_001156942.1 Accepted alive Link to Nucleotide Sequence:NM_001163470.1Link to Protein Sequence:NP_001156942.1Re-query CCDS DB by Nucleotide ID:NM_001163470Re-query CCDS DB by Protein ID:NP_001156942Link to BLAST:NP_001156942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156942.1 580 Q3UDK1-1 580 100% 0 0

Chromosomal Locations for CCDS 51638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121372359 121372412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121372603 121372675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121373138 121373474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121373947 121374067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121375016 121375246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121375796 121375872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121377738 121377944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121378496 121378901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121379416 121379469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121379546 121379681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121384040 121384086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCCGAGTTTCGAGATGACCAGGCTTCTAGGCTGTGTGACAACTGCAAGAAGGAAATTCCTGTATTTA
ATTTTACCATCCATGAAATCCACTGTCAAAGGAACATTGGTGTGTGCCCTGTCTGCAAGGAACCGTTCCC
CAAATCTGACATGGACATTCACATGGCTGCAGAGCACTGTCAGGTGACCTGTAAATGCAACAAGAAGTTG
GAGAAGAGGCAGTTAAAGCAGCATGCGGAGACAGAGTGTCCCCTGCGGCTCGCCGTCTGCCAGCACTGTG
ATCTGGAGCTTTCTGTTGTCAAGTTGAAGGAGCATGAGGATTACTGTGGAGCCCGGACAGAGCTGTGTGG
CAGCTGTGGGCGCAACGTGCTTGTGAAGGAGCTGAAGACTCACCCCGAAGTCTGTGGGAGAGTGGAGGAG
GAAAAGAGAACGGAGGCTGCCATCCCTCCGGAGGCTTACGACGAGCCCTGGAGTCAGGACAGAATCTGGA
TCGCATCCCAGCTCCTCAGACAAATCGAGGCTCTGGACCCGCCCATGAGGCTCCCTGGAAGGCCCCTGCA
AGCCTTTGAGGCAGACCCCTTCTACAGTAGGACTACCAGCCAGAGGAGCATGGCAGCCCAGTTTCCAGTT
CAAAATAATCTTTTTGAAGAACAAGAAAGGCAGGAAAGGAACAGAAGCCGGCAGTCCCCAAAGGACAGCG
CTGAGAATAACGCACACTTGGACTTCATGTTGGCCTTGAGTCTGCAGAATGAGGGACAGGCCACCAGCAT
GGTAGAGCAGGGCTTCTGGGAGTCTGTGCCTGAGGCTGATCCGGCTCGTGCTGGGCCCACATCTCTAGGT
GACATAAAGGGTGCTGCTGACGAGATTCTGCTGCCGTGTGAGTTCTGTGAGGAGCTGTACCCAGAGGAAC
TGCTCATTGACCATCAGACAAGCTGCAACCCTTCTCATGCCTTACGTTCACTCAATACGGGCAGCTCTTC
CATCAGGGGTGTGGAAGATCCTGGTACCATCTTCCAGAACTTTCTACAACAAGCAACAAGTAACCAGTTT
GACACTTTAATGGGCCTGAGCAGTTCAGCTGCTGTGGAAGACAGCATCATCATCCCCTGTGAGTTCTGTG
GGGTGCAGCTGGAAGAGGAGGTGCTGTTCTACCATCAGGACCAGTGTGACCAACGCCCAGCCACAGCAAA
CCACCGTGCAGTGGAGGGCATCCCAGCCCAGGATTCGCAGCCAGAAAACACTTCAGCAGAGCTGTCCAGG
AGGCGGGTCAAACACCAGGGAGACCTGTCATCTGGTTACATGGATGATGTCAAGCCGGAATCAGTGAAAG
GCCCCACCTACTCGATGTCTCCTAACAGGACCATGAACAATGTGGCTTCCTGCAACCGACTGTTGAACTT
ACCGTCAGGGCCCAGGTCTGACTGCCAGCGTAGCCCTCCCGGTGTGCTGAAACTCAACAACTCTGATAGC
CAGGACATCCGTGGGCAGATGCGGGGCAGCCAGAATGGGCCCATAGCATCCGGGCACGCTCCAGTGATCC
ACTCTATTCAAAATCTCTATCCAGAAAACTTTGCGCCCTCTTTTCCTCATGGATCCCCTGGGAGGTACGG
AGCTGGTGGGAGGAGTGAAGGTGGTCGGAGCTCTCGGGTCAGCCCTGCAGCTGCTGGCTACCACAGCAGA
GCAGCAAAGGCCAAGCCTCCAAAGCAGCAGGGAGCAGGCGATGCGGAGGAGGAAGAGGAGTGA

Translation (580 aa):
MAEFRDDQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCKCNKKL
EKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE
EKRTEAAIPPEAYDEPWSQDRIWIASQLLRQIEALDPPMRLPGRPLQAFEADPFYSRTTSQRSMAAQFPV
QNNLFEEQERQERNRSRQSPKDSAENNAHLDFMLALSLQNEGQATSMVEQGFWESVPEADPARAGPTSLG
DIKGAADEILLPCEFCEELYPEELLIDHQTSCNPSHALRSLNTGSSSIRGVEDPGTIFQNFLQQATSNQF
DTLMGLSSSAAVEDSIIIPCEFCGVQLEEEVLFYHQDQCDQRPATANHRAVEGIPAQDSQPENTSAELSR
RRVKHQGDLSSGYMDDVKPESVKGPTYSMSPNRTMNNVASCNRLLNLPSGPRSDCQRSPPGVLKLNNSDS
QDIRGQMRGSQNGPIASGHAPVIHSIQNLYPENFAPSFPHGSPGRYGAGGRSEGGRSSRVSPAAAGYHSR
AAKAKPPKQQGAGDAEEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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