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Report for CCDS51651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51651.1 Public Mus musculus 5 Glt1d1 23 108 98 CCDS HistoryNCBI Gene:319804Re-query CCDS DB by CCDS ID:51651.1Re-query CCDS DB by GeneID:319804See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118139.2 ENSMUSP00000113864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118139.2Link to Ensembl Protein Viewer:ENSMUSP00000113864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118139Re-query CCDS DB by Protein ID:ENSMUSP00000113864
Original member Current member NCBI NM_177005.4 NP_795979.2 Accepted alive Link to Nucleotide Sequence:NM_177005.4Link to Protein Sequence:NP_795979.2Re-query CCDS DB by Nucleotide ID:NM_177005Re-query CCDS DB by Protein ID:NP_795979Link to BLAST:NP_795979.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795979.2 346 A4FUP9-1 346 100% 0 0

Chromosomal Locations for CCDS 51651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 127632284 127632351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127644319 127644467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127650683 127650788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127657087 127657138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127663342 127663378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127664652 127664708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127677205 127677300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127678091 127678140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127689837 127689880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127690990 127691110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127694227 127694325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 127706863 127707024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCGGCTCCTGTTCCTGGCAGTACTGAGGCCTCACACTGGCAACGCGGTCACAGCTGGGCGCCTACGGG
ACCACCTAGAAGCTGCAGGCCACATGTGTGTTCTGAGAGATGCCTTTGATTTTGAAAGCCCATCTGAAAT
TGCCAACCTGATCATGGATGAAAATCTGGAAGCAGCACTAGCTCTTCACCTCTACCGAGGAGGCAGACTT
CTGCAAGGTCACAGCATTCCTTTCGGGGTCATCTTTGGTGGAACTGACTTAAATGAAGATGCCAATCACA
AAGAAAAAAAGGAAGTCATGGGGAAAGTTCTGGAGGAAGCCAGGTTTGCTGTGGCTTTCACCGAGGCAAT
GAAGGACACAGCTCAGGTGCAGTGGCCACATGCAACTGGGAAGATCTTTGTCCAGAGTCAAGGAATTGCA
ACAATACCAAATGCCAACTTTAACTGGAACACCTTCCTGCAGCAATCAGAGATTGACCAAAGCGCTGACA
ACCTGTACATATTCCTTATAATCTGTGGACTCAGACCGGTGAAGGATCCTCTGTACCTTGTGGATGCATT
CTCAGAATGGCATCAAGAAACACCCAATGTTTACATGGTGATCGTAGGTCCTGAGGTAGATCCAGTGTTT
ACAAGGGAAGTGAAAGAGCGGGTGAGGAGGGCTGCAGGGGTGCGGCTGATCCGAGAGATGTGCCAGGAAG
ATCTGCATGCAGTGGTGAAGAGCTGCTTTGCGCTGGTCAACAGCTCCGTCTCCGAGGGCATGTCAGCTGC
CATCTTGGAGGCAATGGATTTGGAAGTTCCCGTGCTAGCCAGGAACATCCCTGGGAACTCGGCTGTGGTA
GAGCACGGAGTCACGGGACTGCTGTTTTCAAACCCTCAGGAGTTCATTCAGTTGGCAAAGAGACTGGTTA
GCGATCCCGCACTGGAGAAGGAAATCGTGACCAACGGAAGGGAATACGTGAGGACGCATCATTCCTGGCA
GGTGGAGAGAGACACCTACCAGCGCCTCATCAGGAAGCTAGAGACGAACTTGGAGGATTAA

Translation (346 aa):
MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIMDENLEAALALHLYRGGRL
LQGHSIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAQVQWPHATGKIFVQSQGIA
TIPNANFNWNTFLQQSEIDQSADNLYIFLIICGLRPVKDPLYLVDAFSEWHQETPNVYMVIVGPEVDPVF
TREVKERVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVV
EHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLIRKLETNLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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