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Report for CCDS51676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51676.1 Public Mus musculus 5 Pilrb2 23 108 98 CCDS HistoryNCBI Gene:545812Re-query CCDS DB by CCDS ID:51676.1Re-query CCDS DB by GeneID:545812See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164886.1 ENSMUSP00000131233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164886.1Link to Ensembl Protein Viewer:ENSMUSP00000131233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164886Re-query CCDS DB by Protein ID:ENSMUSP00000131233
Original member Current member NCBI NM_001024932.2 NP_001020103.1 Accepted alive Link to Nucleotide Sequence:NM_001024932.2Link to Protein Sequence:NP_001020103.1Re-query CCDS DB by Nucleotide ID:NM_001024932Re-query CCDS DB by Protein ID:NP_001020103Link to BLAST:NP_001020103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020103.1 225 Q2YFS1 225 100% 0 0

Chromosomal Locations for CCDS 51676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137866853 137866868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137868578 137868767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137870865 137871251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137871569 137871653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCTTTGCTGATCTCGCTTCCTGGAGAGACTCCAGCCATGGCTCAGATCCTGCTTCTGCTCTCATCAG
CCTGTCTGCATGCTGGAAATTCAGCAAGATCAAACGGAGGAAATGACTTTGGGGTCAACCAACCTGAACG
CTGCTCTGGAGTCCAGGGTGGCTCCATCGACATCCCCTTCTCCTTCTACTTCCCCTGGAAGTTAGCCAAG
GATCCACAGATGAGCATAGCCTGGAGATGGAAGGATTTCTTTGGGCACTTCATCTACAACTCCTCCATGC
CTTTCATACATGAGCACTTCAAGGGCCGGCTCATCCTGAACTGGACACAGGGTCAGACATCTGGAGTCCT
CAGAATCCTGAACTTTAAGGAGTCTGACCAGACCTGGTACTTCTGCAGAGTTTTTCTGCAAACAACAGAA
GGCATAAAGTTTTGGCAGTCACTTCCTGGAACCCAACTCACCCTGACACAAGCACTCAACACCACCATGA
GGAGCCCCTTCATCGTCACCTCTGAATTCACCACAGCTGGCCTGGAGCACACAAGGGACAAGAGGAATCC
TTCACTGATGAACCTGGGAGCCATGGTCACGATGCTCCTGGCTAAAGTTGTAGTCATAATCCTAGTCTAT
GGATGGATGATCTTCCTGAGGTGGAAGCAAAGACCTGACCCTGCATGA

Translation (225 aa):
MALLISLPGETPAMAQILLLLSSACLHAGNSARSNGGNDFGVNQPERCSGVQGGSIDIPFSFYFPWKLAK
DPQMSIAWRWKDFFGHFIYNSSMPFIHEHFKGRLILNWTQGQTSGVLRILNFKESDQTWYFCRVFLQTTE
GIKFWQSLPGTQLTLTQALNTTMRSPFIVTSEFTTAGLEHTRDKRNPSLMNLGAMVTMLLAKVVVIILVY
GWMIFLRWKQRPDPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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