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Report for CCDS51683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51683.1 Public Mus musculus 5 Cyp2w1 23 108 98 CCDS HistoryNCBI Gene:545817Re-query CCDS DB by CCDS ID:51683.1Re-query CCDS DB by GeneID:545817See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031521.12 ENSMUSP00000031521.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031521.12Link to Ensembl Protein Viewer:ENSMUSP00000031521.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031521Re-query CCDS DB by Protein ID:ENSMUSP00000031521
Original member Current member NCBI NM_001160265.2 NP_001153737.1 Accepted alive Link to Nucleotide Sequence:NM_001160265.2Link to Protein Sequence:NP_001153737.1Re-query CCDS DB by Nucleotide ID:NM_001160265Re-query CCDS DB by Protein ID:NP_001153737Link to BLAST:NP_001153737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153737.1 493 E9Q816 493 100% 0 0

Chromosomal Locations for CCDS 51683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139352647 139352829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139353840 139354002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139354240 139354389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139354460 139354617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139355554 139355727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139356050 139356188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139356268 139356452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139356606 139356747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139356846 139357033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCTCTGCTGCTCCTGGGTGTCTGGGGGATCTTGCTACTTCTGGGGCTGTGGGGACTGCTCCAGGGCT
GCACCCGGAGCCCCTCCCTGGCTCCTCGGTGGCCCCCTGGGCCTCGCCCTCTGCCGTTCCTGGGGAACCT
GCATTTGCTGGGTGTGACCCAACAAGACCGGGCACTGATGGAGCTCTCAGAACGCTACGGGCCCATGTTC
ACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTATGAGGTGGTGAGGGAGGCCTTGGTTG
GAACCGGGCATGAGCTAGCCGACCGGCCCCCAATTCCCATCTTCCAGCACATCCAGCGAGGTGGGGGCAT
TTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGT
GTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCT
ATGGAGGCCAGCCCCTCCCCCTGGCGCTGCTGGGTTGGGCACCCTGCAACATCACCTTCACACTTCTCTT
CGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGCTGAGTCTCATTGACCAGGTCATGGTC
CTGTTGGGGTCACCTGGCATACAGCTATTCAACACGTTCCCCCGGCTGGGGGCCTTCCTGCGGTTGCACA
GGCCGGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTGAGAACCCTGCTGGAAACGCGGAGACCACC
CTTGCCAACGGGCGGTCCCGCGCAGAGTTATGTAGAAGCTCTGCTTCAGCAGGGCCAGGAAGATGACCCT
GAGGACATGTTTGGCGAGGCCAATGTCCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACCA
CGGCGGCCACGCTGCAGTGGGCCGTCTTCCTGATGGTTAAGCACCCACATGTGCAGGGTCGCGTGCAGGA
GGAACTGGACCGAGTGCTGGGTCCTGGGCAGCTGCCTCAACCAGAGCACCAGCGAGCACTGCCCTACACC
AGTGCTGTGTTGCATGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACAGCTGCTG
ACATCCAGCTGGGTGGCTACCTGCTCCCCAAGGGCACTCCTGTGATTCCTTTGCTCACTTCAGTCCTCCT
GGACAAGACGCAGTGGGAGACCCCAAGCCAGTTCAACCCAAACCACTTTCTGGACGCGAAGGGGCGCTTT
ATGAAGCGGGGGGCCTTCCTGCCATTCTCCGCTGGTCGCCGGGTCTGCGTTGGGAAGAGCCTGGCCAGGA
CAGAGCTCTTCCTGCTGTTCGCTGGCCTCCTTCAGCGGTACCGCCTCCTGCCCCCACCCGGCCTCAGCCC
TGCAGACCTGGATTTACGGCCTGCCCCAGCTTTCACCATGCGGCCTCCTGCCCAGACCTTGTGTGTGGTG
CCGAGATCTTAG

Translation (493 aa):
MALLLLGVWGILLLLGLWGLLQGCTRSPSLAPRWPPGPRPLPFLGNLHLLGVTQQDRALMELSERYGPMF
TIHLGSQKTVVLSGYEVVREALVGTGHELADRPPIPIFQHIQRGGGIFFSSGARWRAGRQFTVRTLQSLG
VQQPSMVGKVLQELACLKGQLDSYGGQPLPLALLGWAPCNITFTLLFGQRFDYQDPVFVSLLSLIDQVMV
LLGSPGIQLFNTFPRLGAFLRLHRPVLSKIEEVRTILRTLLETRRPPLPTGGPAQSYVEALLQQGQEDDP
EDMFGEANVLACTLDMVMAGTETTAATLQWAVFLMVKHPHVQGRVQEELDRVLGPGQLPQPEHQRALPYT
SAVLHEVQRYITLLPHVPRCTAADIQLGGYLLPKGTPVIPLLTSVLLDKTQWETPSQFNPNHFLDAKGRF
MKRGAFLPFSAGRRVCVGKSLARTELFLLFAGLLQRYRLLPPPGLSPADLDLRPAPAFTMRPPAQTLCVV
PRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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