NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51688.1 Public Mus musculus 5 Spdye4b 23 108 98 CCDS HistoryNCBI Gene:330228Re-query CCDS DB by CCDS ID:51688.1Re-query CCDS DB by GeneID:330228See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031574.9 ENSMUSP00000031574.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031574.9Link to Ensembl Protein Viewer:ENSMUSP00000031574.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031574Re-query CCDS DB by Protein ID:ENSMUSP00000031574
Original member Current member EBI ENSMUST00000159781.1 ENSMUSP00000125524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159781.1Link to Ensembl Protein Viewer:ENSMUSP00000125524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159781Re-query CCDS DB by Protein ID:ENSMUSP00000125524
Original member Current member NCBI NM_177880.4 NP_808548.1 Accepted alive Link to Nucleotide Sequence:NM_177880.4Link to Protein Sequence:NP_808548.1Re-query CCDS DB by Nucleotide ID:NM_177880Re-query CCDS DB by Protein ID:NP_808548Link to BLAST:NP_808548.1

Chromosomal Locations for CCDS 51688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143192298 143192358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143194842 143195060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143195672 143195730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143196288 143196373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143202018 143202186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143202348 143202450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143204153 143204166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGTCATGCCCTGGAGCTCGCCTCTGTGCACCATGCCGTCTAAATCTGCTTTCTTCAGTCAACCAAGGG
TGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCATCAGATTCTGAGGA
TGACCTGGCAGAGCTATTTGAACCTGATCCCCAGCCGGTGTGGTCAGTGGAGACGCCGTGTGGGCTCAGG
ATGACGCTGCAGAGGCAATGTGTGTCTACAGTGAGGCCTGAACACCACAAGGTCTTCACCAAGTTGCTCG
AGGATCCCGTGGTGAAAAAATTCCTGACCTGGGACAAGATGCTGCGGGTGTCAGACAAGTACCTCCTGTC
TATGGTCATAGCTTATTTCAGCCGCGCTGGGCTCTTCTCCTGGCAGTACAGGCCCATCCACTTCTTCCTG
GCTCTCTACCTGGCCAATGACATGGAGGAGGACAACCAGGCCCCTAAGCAAGACATTTTTTACTTCCTCT
ATGGGAAGAGCTATGCCCAGCGCCCCATGTTCCACAAACTGCGCTTCCAGTTCATTCGGTCCATGGGCTG
GAGGATCTGGGTGTCCCAGGAAGAGTGTGAAGAGATCCAGGCTTACGACCCAGAGCTCTGGGTATGGACA
CGGGATCGTACTAAGCTGACCCAGAACCCTAGGGTCATGGATACTCGAGGCCATCCGCCTGCCATAGATC
CCTGTGCCTGA

Translation (236 aa):
MVMPWSSPLCTMPSKSAFFSQPRVEATPQPPSSIQKRKRDESSDSEDDLAELFEPDPQPVWSVETPCGLR
MTLQRQCVSTVRPEHHKVFTKLLEDPVVKKFLTWDKMLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFL
ALYLANDMEEDNQAPKQDIFYFLYGKSYAQRPMFHKLRFQFIRSMGWRIWVSQEECEEIQAYDPELWVWT
RDRTKLTQNPRVMDTRGHPPAIDPCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH