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Report for CCDS51728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51728.1 Public Mus musculus 6 Hyal6 23 108 98 CCDS HistoryNCBI Gene:74409Re-query CCDS DB by CCDS ID:51728.1Re-query CCDS DB by GeneID:74409See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031690.5 ENSMUSP00000031690.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031690.5Link to Ensembl Protein Viewer:ENSMUSP00000031690.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031690Re-query CCDS DB by Protein ID:ENSMUSP00000031690
Original member Current member NCBI NM_028920.2 NP_083196.2 Accepted alive Link to Nucleotide Sequence:NM_028920.2Link to Protein Sequence:NP_083196.2Re-query CCDS DB by Nucleotide ID:NM_028920Re-query CCDS DB by Protein ID:NP_083196Link to BLAST:NP_083196.2

Chromosomal Locations for CCDS 51728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24734070 24734993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24740774 24740863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24743321 24743791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTTTATCCAGTGGGTGACACAGCTTGGTGAACTGGTGCTCTTCGTCCTTCTGGTCGCTCCGGCAGCTC
TGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAACGTTTTCTGGGCCGCCCCTACTTTGTT
TTGTAAAGATAATTTCAATGTAAACATGAATCTTCAAGTATTTAACATCATTCCGAATCCTTTCGAAACT
CAGAGTGGATCCACTATTACCGTATTTTATCCAAAGGAACTCGGGTATTACCCTTATTTCTCTGAAGATG
GAACATCCTTCTATGGTGGAATACCTCAGAAAGTGAACCTCTCTGAGCACCTCAGGAAAAGTGCCGGCGA
CATTGCAGATGCTGTCACTTTGTGGAGATCGGAAGGACTTGCTGTTATAGACTGGGAAGGCTGGAGGCCC
CAGTGGGATAGGAATTGGGGCAGTAGAATGATATATAAAAACCACTCGCTAGCCTTCACTCGACACCACC
ATCCTGACTGGGCAGAAACAAAAGTGAGAACAGCTGCCCAGAAAGAATTTGAAAATGCTGGAAGAAGTTT
TATGAATGTTACTCTCACGTTGGCTTTAGAAATGAGACCAAAGCGTTTATGGGGCTTCTATCTCTATCCA
GATTGCTACAATTATGATTACCGGATAAATCCAGAGTTCTACACAGGAAGTTGCCCAGATGATGAAATTT
TCCGCAATGACCAACTCATGTGGCTATGGGAAAAAAGTGCAGCACTTTATCCTTCCATATATTTGAGTAA
AATATTAAAATCAAACTTAAATGCATTGAAATTTGTTCATTTCCGAGTGAGAGAAGCCCTGAGGGTTGCC
GAAATGGCTAGAAAGGACTATGTTTTGCCAGTTTTCATTTTTTCCAGACCATTTTATTTGCAAAGTATTG
AAGCTCTCTCAGAGGAGGATTTAGTGCACACAATTGGCGAAAGTGCTGCATTGGGAGCAGCAGGAATAAT
ATTGTGGGGAGGATATGAATATTCGGATACAAAGGAGACTTGCTTATCTGTGAGACAAACTGTTCATGGG
CTATTGGGTCCCTATGTTCTCAATGTAACATCGGCAGCAAAGCTCTGTAGTCAAAATCTATGTAACAGTC
ATGGAAGATGTGTACGGAAGACACCTGAATCTTCCTTTTATCTGCATATGCCTGAGGATAGCCATAAGAA
TTATGTGTCAAAGAAGGGTTTCAGATTTGTCATTCCCTCCCCAAGTAAGCTGAAGACAATAATGAATATG
AAGAATGGATTTGTGTGCCACTGTTACTATGGCTGGCATGGAGACTCCTGCAGATCTCACTCTCCAAATC
TCCAAAAGAACAAAGCTCCTGCAAGTGGATTGAATTCAGCAGTTATTGTTGGCATGGCCTTATTTGTGAT
TCTGATGAATTATTTTCCTATTCCCTACTACAATGGCAATTTTTCCTTGAAACCACTGAAGAGAAGAGAA
ATTATCTTTCTTTGA

Translation (494 aa):
MFIQWVTQLGELVLFVLLVAPAALKPAMPPVIKDHPFNVFWAAPTLFCKDNFNVNMNLQVFNIIPNPFET
QSGSTITVFYPKELGYYPYFSEDGTSFYGGIPQKVNLSEHLRKSAGDIADAVTLWRSEGLAVIDWEGWRP
QWDRNWGSRMIYKNHSLAFTRHHHPDWAETKVRTAAQKEFENAGRSFMNVTLTLALEMRPKRLWGFYLYP
DCYNYDYRINPEFYTGSCPDDEIFRNDQLMWLWEKSAALYPSIYLSKILKSNLNALKFVHFRVREALRVA
EMARKDYVLPVFIFSRPFYLQSIEALSEEDLVHTIGESAALGAAGIILWGGYEYSDTKETCLSVRQTVHG
LLGPYVLNVTSAAKLCSQNLCNSHGRCVRKTPESSFYLHMPEDSHKNYVSKKGFRFVIPSPSKLKTIMNM
KNGFVCHCYYGWHGDSCRSHSPNLQKNKAPASGLNSAVIVGMALFVILMNYFPIPYYNGNFSLKPLKRRE
IIFL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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