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Report for CCDS51770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51770.1 Public Mus musculus 6 Pals2 23 108 98 CCDS HistoryNCBI Gene:56524Re-query CCDS DB by CCDS ID:51770.1Re-query CCDS DB by GeneID:56524See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036225.14 ENSMUSP00000038772.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036225.14Link to Ensembl Protein Viewer:ENSMUSP00000038772.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036225Re-query CCDS DB by Protein ID:ENSMUSP00000038772
Original member Current member EBI ENSMUST00000166318.7 ENSMUSP00000125880.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166318.7Link to Ensembl Protein Viewer:ENSMUSP00000125880.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166318Re-query CCDS DB by Protein ID:ENSMUSP00000125880
Original member NCBI NM_001164733.1 NP_001158205.1 Updated not alive Link to Nucleotide Sequence:NM_001164733.1Link to Protein Sequence:NP_001158205.1Re-query CCDS DB by Nucleotide ID:NM_001164733Re-query CCDS DB by Protein ID:NP_001158205
Current member NCBI NM_001164733.2 NP_001158205.1 Accepted alive Link to Nucleotide Sequence:NM_001164733.2Link to Protein Sequence:NP_001158205.1Re-query CCDS DB by Nucleotide ID:NM_001164733Re-query CCDS DB by Protein ID:NP_001158205Link to BLAST:NP_001158205.1
Original member NCBI NM_001164734.1 NP_001158206.1 Updated not alive Link to Nucleotide Sequence:NM_001164734.1Link to Protein Sequence:NP_001158206.1Re-query CCDS DB by Nucleotide ID:NM_001164734Re-query CCDS DB by Protein ID:NP_001158206
Current member NCBI NM_001164734.2 NP_001158206.1 Accepted alive Link to Nucleotide Sequence:NM_001164734.2Link to Protein Sequence:NP_001158206.1Re-query CCDS DB by Nucleotide ID:NM_001164734Re-query CCDS DB by Protein ID:NP_001158206Link to BLAST:NP_001158206.1
Original member NCBI NM_001361248.1 NP_001348177.1 Updated not alive Link to Nucleotide Sequence:NM_001361248.1Link to Protein Sequence:NP_001348177.1Re-query CCDS DB by Nucleotide ID:NM_001361248Re-query CCDS DB by Protein ID:NP_001348177
Current member NCBI NM_001361248.2 NP_001348177.1 Accepted alive Link to Nucleotide Sequence:NM_001361248.2Link to Protein Sequence:NP_001348177.1Re-query CCDS DB by Nucleotide ID:NM_001361248Re-query CCDS DB by Protein ID:NP_001348177Link to BLAST:NP_001348177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158205.1 553 Q9JLB0-1 553 100% 0 0
NP_001158206.1 553 Q9JLB0-1 553 100% 0 0
NP_001348177.1 553 Q9JLB0-1 553 100% 0 0

Chromosomal Locations for CCDS 51770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50145776 50145892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50158682 50158834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50162586 50162735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50163422 50163649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50176877 50176918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50178389 50178520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50180176 50180275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50180591 50180659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50183710 50183871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50194526 50194728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50196514 50196642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50198154 50198330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCAGCAAGTTTTGGAAAACCTTACAGAGCTGCCCTCATCTACAGGAGCAGAGGAGATAGACCTAATTT
TCCTCAAGGGGATTATGGAGAATCCTATTGTGAAGTCACTTGCTAAGGCTCATGAGAGACTTGAAGATTC
AAAGTTAGAAGCTGTGAGTGACAATAACTTGGAATTAGTGAATGAAATTCTTGAAGATATCACTCCTCTG
ATTAGTGTGGATGAAAATGTGGCAGAGCTAGTTGGGATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGG
AGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCGCCTCCTTCCAGCCCAGAAATGAATATTCCTTC
TCTCAATAATCAATTGCCAGTAGATGCCATCCGTATTCTCGGTATTCACAAAAAAGCTGGAGAGCCATTG
GGTGTAACATTTAGAGTTGAAAATAATGATCTGGTAATCGCCCGAATCCTTCATGGAGGAATGATAGATC
GACAAGGTCTGCTTCACGTGGGAGATATCATTAAGGAAGTCAATGGTCATGAGGTTGGAAACAATCCAAA
GGAATTACAAGAATTATTGAAAAATATTAGTGGAAGTGTCACCCTAAAAATTTTACCAAGTTACAGAGAT
ACTATTACTCCTCAGCAGAGTTACGTCAATATGGAGAGGCACCCAGCCCACGTCCGTCAGGTATTTGTCA
AGTGTCATTTTGATTATAATCCATTCAATGATAACCTGATACCCTGCAAAGAAGCAGGACTAAAATTTTC
CAAAGGAGAAATTCTTCAGATTGTAAACAGAGAAGACCCAAATTGGTGGCAGGCTAGCCATGTGAAAGAG
GGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTCCTGGAAGAGAAGAGAAAGGCATTTGTTCGCCGAGACT
GGGACAATTCAGGACCCTTTTGTGGAACTATAAGCAACAAGAAAAAGAAAAAGATGATGTACCTCACAAC
CAGGAATGCAGAGTTTGATCGTCATGAAATTCAGATCTATGAGGAAGTAGCAAAAATGCCACCCTTCCAA
CGGAAAACGTTAGTTTTGATCGGAGCTCAAGGTGTGGGCAGAAGGAGCTTGAAAAACAGGTTCATAGTAC
TGAATCCTGCTAGATTTGGAACAACGGTGCCATTTACTTCACGGAAGCCAAGAGAAGACGAAAAGGATGG
ACAAGCATATAAATTTGTGTCCCGATCAGAGATGGAAGCAGATATTAAGGCTGGGAAGTATTTGGAGCAT
GGGGAGTACGAAGGAAACCTGTATGGAACCAAGATCGACTCTATTCTCGAGGTTGTCCAGACTGGGCGGA
CTTGCATTTTGGACGTCAACCCACAAGCACTGAAAGTGTTAAGGACTTCTGAATTCATGCCTTATGTGGT
GTTTATTGCTGCTCCAGAGCTAGAGACCTTGCGTGCCATGCACAAGGCTGTGGTGGATGCGGGAATCACC
ACCAAGCTTTTGACGGACTCTGACTTGAAGAAAACAGTGGATGAAAGTGCCCGAATTCAGAGAGCATACA
ACCACTACTTTGATTTGATCATCGTAAATGACAATCTAGACAAAGCCTTTGAGAAACTACAAACTGCCAT
TGAGAAACTGAGGATGGAGCCACAGTGGGTCCCAATTAGCTGGGTGTACTGA

Translation (553 aa):
MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPL
ISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNIPSLNNQLPVDAIRILGIHKKAGEPL
GVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRD
TITPQQSYVNMERHPAHVRQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKE
GGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQ
RKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEH
GEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGIT
TKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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