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Report for CCDS51778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51778.1 Public Mus musculus 6 Chn2 23 108 98 CCDS HistoryNCBI Gene:69993Re-query CCDS DB by CCDS ID:51778.1Re-query CCDS DB by GeneID:69993See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046856.13 ENSMUSP00000035908.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046856.13Link to Ensembl Protein Viewer:ENSMUSP00000035908.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046856Re-query CCDS DB by Protein ID:ENSMUSP00000035908
Original member Current member NCBI NM_001163640.1 NP_001157112.1 Accepted alive Link to Nucleotide Sequence:NM_001163640.1Link to Protein Sequence:NP_001157112.1Re-query CCDS DB by Nucleotide ID:NM_001163640Re-query CCDS DB by Protein ID:NP_001157112Link to BLAST:NP_001157112.1

Chromosomal Locations for CCDS 51778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54040107 54040155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54173464 54173502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54194026 54194081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54215662 54215693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54218524 54218637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54220417 54220702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54273076 54273153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54286094 54286178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54290267 54290440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54293038 54293115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54295784 54295921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54298045 54298150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54300073 54300244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCAGCATCCAGCAACTCTAGTCTGTCCGGCTCCTCCGTGTCCTCTGATGCTGAGGAATACCAGCCTC
CAATATGGAAATCATACTTGTATCAGCTGCAGCAAGAGGCACCTCGTCCCAAGAGGATCATTTGTCCCCG
GGAGGTGGAAAACAGACCAAAATATTATGGAAGAGAGTTTCATGGGATCATCTCTCGGGAGCAGGCTGAT
GAGCTTCTAGGCGGCGTGGAAGGTGCCTACATCCTTCGAGAAAGCCAGCGGCAGCCAGGATGCTACACGC
TGGCACTGAGGTTTGGGAACCAGACCTTAAACTACCGGCTCTTCCACGACGGGAAGCACTTTGTGGGTGA
GAAGAGGTTCGAATCCATTCACGACCTGGTGACAGATGGCTTGATCACACTCTACATAGAGACCAAGGCT
GCTGAGTACATCGCGAAAATGACCACAAATCCCATCTACGAGCACATCGGATACGCCACTCTCCTCAGAG
AAAAAGTGTCCCGAAGGCTGAGCAGGTCTAAAAACGAATCAAGGAAAGCTAGCGTCAGCAACGAGGAGCA
CACGCCAGTGGAGAAGATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAACGACAACCACTTCAAC
TATGAGAAGACACACAACTTCAAGGTGCACACATTCCGGGGCCCACACTGGTGTGAATACTGTGCCAATT
TTATGTGGGGGCTCATCGCCCAGGGAGTCCGGTGTTCAGATTGTGGGTTAAACGTACACAAACAGTGCTC
CAAGCACGTCCCCAATGACTGCCAGCCAGATCTCAAGAGGATCAAGAAAGTGTACTGCTGTGACCTCACC
ACGCTTGTCAAAGCTCACAACACTCAGAGACCCATGGTGGTGGACATATGTATTCGGGAAATTGAAGCAA
GAGGATTAAAGTCAGAAGGGCTTTACAGAGTCTCTGGATTCACAGAACACATTGAAGATGTCAAGATGGC
GTTTGACAGAGATGGTGAAAAGGCGGATATCTCTGCCAACATCTACCCAGACATAAACATCATCACTGGA
GCCCTGAAACTGTACTTCCGAGACTTACCCATCCCTATCATCACATATGACACCTACTCCAAATTTATAG
AGGCAGCAAAAATCTCCAATGCGGATGAGAGGCTGGAAGCTGTCCATGAGGTCCTGATGCTGCTGCCTCC
TGCCCACTATGAGACCCTGCGCTACCTGATGATCCACCTGAAAAAGGTTACCATGAATGAAAAGGACAAT
TTAATGAATGCCGAAAATCTGGGGATCGTGTTTGGGCCCACCCTGATGAGACCCCCTGAGGACAGCACCC
TCACCACCCTCCATGACATGCGGTACCAAAAGCTGATCGTGCAGATTTTAATAGAAAACGAAGATGTTCT
GTTTTAA

Translation (468 aa):
MAASSNSSLSGSSVSSDAEEYQPPIWKSYLYQLQQEAPRPKRIICPREVENRPKYYGREFHGIISREQAD
ELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDGKHFVGEKRFESIHDLVTDGLITLYIETKA
AEYIAKMTTNPIYEHIGYATLLREKVSRRLSRSKNESRKASVSNEEHTPVEKISSLVRRAALTHNDNHFN
YEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLT
TLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANIYPDINIITG
ALKLYFRDLPIPIITYDTYSKFIEAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDN
LMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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