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Report for CCDS51783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51783.1 Public Mus musculus 6 Pde1c 23 108 98 CCDS HistoryNCBI Gene:18575Re-query CCDS DB by CCDS ID:51783.1Re-query CCDS DB by GeneID:18575See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164037.2 ENSMUSP00000130139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164037.2Link to Ensembl Protein Viewer:ENSMUSP00000130139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164037Re-query CCDS DB by Protein ID:ENSMUSP00000130139
Original member NCBI NM_001159952.1 NP_001153424.1 Updated not alive Link to Nucleotide Sequence:NM_001159952.1Link to Protein Sequence:NP_001153424.1Re-query CCDS DB by Nucleotide ID:NM_001159952Re-query CCDS DB by Protein ID:NP_001153424
Current member NCBI NM_001159952.2 NP_001153424.1 Accepted alive Link to Nucleotide Sequence:NM_001159952.2Link to Protein Sequence:NP_001153424.1Re-query CCDS DB by Nucleotide ID:NM_001159952Re-query CCDS DB by Protein ID:NP_001153424Link to BLAST:NP_001153424.1

Chromosomal Locations for CCDS 51783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56106850 56106863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56122992 56123069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56126859 56127080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56137345 56137520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56139391 56139511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56142094 56142175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56150596 56150716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56151292 56151393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56157023 56157151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56158927 56159027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56173603 56173743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56174908 56175024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56179093 56179159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56180069 56180251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56181684 56181797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56361745 56361845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAGTCTCCAACCAAGGAAATTGAAGAATTCGAGAGCAACTCTCTGAAACACCTGCAACCTGAGCAGA
TCGAGAAAATCTGGCTTCGGCTCCGCGGGCTGTTACGGTCTTTGGTCAAGCAATTAGAACGAGGAGAGGC
CTCTGTGGTAGACCTTAAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAATCTGTATATATTGATGAA
ACAAGGCGACTGCTGGATACAGAGGATGAGCTTAGTGACATTCAATCAGATGCTGTGCCTTCAGAAGTTC
GGGATTGGCTGGCCTCCACCTTCACACGGCAGATGGGGATGATGCTTAGGAGAAGTGATGAGAAGCCCAG
GTTCAAGAGCATCGTCCATGCGGTGCAAGCTGGGATATTTGTGGAAAGAATGTACAGACGGACATCAAAC
ATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATGCATTGAAGGATGTGGATACGTGGTCCTTCGATG
TCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAGTTCATTTTCTATGAATTACTCACACGTTA
TGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTCATTTGTGGAGGCCCTCGAAGTGGGT
TACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACGTCACACAGACTGTGCATTACC
TCCTTTATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCAATAATCTTTTCGGCTGC
CATCCATGACTATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTCAGATCCAGCTATC
CTGTACAATGACAGATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGCAGGAAGACG
AAGAGATGAATATTCTGGTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATTGAGAT
GGTAATGGCCACAGATATGTCCTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCA
GAAGCAATTGAGAAGCCGAAAGCCTTATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAG
CATGGGACCTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGC
AGAGCTGGGGCTGCCATTTTCTCCTCTTTGTGACAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGT
TTTATTGACTTCATTGTGGAGCCCACCTTCACTGTGCTCACGGACATGACCGAGAAGATTGTGAGTCCAT
TAATTGACGAAAGCTCCCAGACTGGTGGGACAGGGCAGAGGAGATCAAGTTTGAACAGCATCAACTCATC
AGATGCAAAGCGATCCGGTGTCAAGAGTTCTGGGTCAGATGGAAGTGCTCCCATCAACAATTCTGTCATT
CCTGTTGACTATAAGAGTTTTAAAGCCACTTGGACTGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAG
CCAAGGTACCCAAAGAAGAAAAAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTGGCTGCTGAGGAAAA
GCAAAAGGAAATGGAAGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGGCGAGAAAAAGACATCA
GGAGAAGCCAAAAGTCAAGTCAATGGAACACGCAAGGGTGATAACCCTCGTGGGAAGAACTCCAAAGGAG
AAAAGGCAGGCGAAAAGCAGCAGAACGGTGACTTGAAAGACGGTAAAAATAAGGCAGACAAGAAGGATCA
CTCCAACACCGGAAATGAGTCAAAGAAAACAGATGATCCAGAGGAGTAG

Translation (622 aa):
MESPTKEIEEFESNSLKHLQPEQIEKIWLRLRGLLRSLVKQLERGEASVVDLKKNLEYAATVLESVYIDE
TRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFKSIVHAVQAGIFVERMYRRTSN
MVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYELLTRYDLISRFKIPISALVSFVEALEVG
YSKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTELEIFAIIFSAAIHDYEHTGTTNNFHIQTRSDPAI
LYNDRSVLENHHLSAAYRLLQEDEEMNILVNLSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQP
EAIEKPKALSLMLHTADISHPAKAWDLHHRWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVG
FIDFIVEPTFTVLTDMTEKIVSPLIDESSQTGGTGQRRSSLNSINSSDAKRSGVKSSGSDGSAPINNSVI
PVDYKSFKATWTEVVQINRERWRAKVPKEEKAKKEAEEKARLAAEEKQKEMEAKSQAEQGTTSKGEKKTS
GEAKSQVNGTRKGDNPRGKNSKGEKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKTDDPEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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