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Report for CCDS51823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51823.1 Public Mus musculus 6 Zfp638 23 108 98 CCDS HistoryNCBI Gene:18139Re-query CCDS DB by CCDS ID:51823.1Re-query CCDS DB by GeneID:18139See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113835.9 ENSMUSP00000109466.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113835.9Link to Ensembl Protein Viewer:ENSMUSP00000109466.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113835Re-query CCDS DB by Protein ID:ENSMUSP00000109466
Original member NCBI NM_001166371.1 NP_001159843.1 Updated not alive Link to Nucleotide Sequence:NM_001166371.1Link to Protein Sequence:NP_001159843.1Re-query CCDS DB by Nucleotide ID:NM_001166371Re-query CCDS DB by Protein ID:NP_001159843
Current member NCBI NM_001166371.2 NP_001159843.1 Accepted alive Link to Nucleotide Sequence:NM_001166371.2Link to Protein Sequence:NP_001159843.1Re-query CCDS DB by Nucleotide ID:NM_001166371Re-query CCDS DB by Protein ID:NP_001159843Link to BLAST:NP_001159843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159843.1 1271 Q61464-2 1271 100% 0 0

Chromosomal Locations for CCDS 51823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83928855 83930165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83934949 83935010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83941245 83941283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83942834 83943141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83944613 83944887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83946217 83946363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83947819 83947941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83953084 83953142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83953335 83953387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83954711 83954761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83957509 83957592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83958184 83958252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83959931 83959968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83961977 83962108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83965529 83965657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83966447 83966488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83967293 83967427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83969117 83969239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83972246 83972283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83976202 83976350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83979847 83979909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83981684 83981785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83983976 83984074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83984777 83984895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83986558 83986623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3816 nt):
ATGTCGAGACCCAGGTTTAATCCTCGAGGGACCTTTCCACTTCAAAGGCCACGAGCACCTAATCCTCCTG
GGATGAGGCCTCCAGGACCATTTGTGAGGCCTGGCTCTATGGGTCTTCCAAGATTTTACCCAGCAGGGAG
AGCCCGTGGAATTCCACACAGATTTCCTGGCCACGGATCTTATCAGAACATGGGACCACAAAGAATGAAT
GTTCAGGTAACTCAACACCGAACCGATCCAAGATTAACCAAAGAAAAATTGGATTTTCCTGAAGCACAAC
AAAAGAAGGGGAAGCCTCATGGTAGTCGGTGGGATGATGAGTCTCATATAACTCCACCGGTAGAAGTGAA
ACAGAGCTCTGTAACCCAGGTTACAGAGCAAAGTCCTAAAGTACAGAGCCGCTACACAAAAGAGAGTGCT
TCAAGTATTTTAGCAAGTTTTGGATTATCAAATGAAGATCTAGAAGAACTTAGCCGCTATCCTGATGAAC
AGCTAACTCCTGAAAATATGCCATTAATATTGAGGGATATAAGAATGCGAAAAATGAGCCGCCGATTACC
TAATTTACCTTCTCACAGCAGAAATAAGGAAACACTTAGTAATGAAACAGTTTCAAGTAATGTGATTGAT
TATGGGCATGCAAGCAAATATGGTTATACAGAAGATCCACTTGAAGTACGTATTTATGATCCTGAAATTC
CAACTGATGAAGTAAAGAATGAATTTCAGCCCCAGCAGAGCATTTCTGCAACTGTTTCAACTCCAAATGT
GATATGTAATTCTGTGTTTCCTGGTGGAGATATGTTTCGTCAGATGGACTTCCCTGGTGAGTCCTCCAGT
CAGTCTTTTTTCCCAGTTGAGAGTGGAACCAAGATGTCAGGCTTACACATTTCAGGACAGTCAGTCCTTG
AACCTGTAAAATCCATCAGCCAGTCTATTAGCCAAACAGTTAGCCAGACAACGAGCCAGTCTCTGAATCC
TCCATCTATGAACCAGGTACCCTTTACATTTGAATTAGATGCAGTTTTACGCCAACAAGAGCGGATCTCA
CAGAAGTCTGTGATCAGTTCAGCTGATGCACATGGTGGACCTACAGAAAGTAAAAAGGATTACCAATCAG
AGGCTGACTTGCCTATTCGGTCTCCCTTTGGGATTGTGAAAGCTTCGTGGCTACCAAAGTTTACACAAGC
TGGTGCCCAGAAAATGAAGAGACTGCCAACCCCTTCTATGATGAATGATTATTATGCAGCATCTCCAAGA
ATATTTCCACATTTGTGTTCTCTGTGTAACGTAGAATGTAGTCATTTGAAGGACTGGATTCAGCATCAAA
ATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACAATACCCTGATTGGAATCCTGAGATCCT
CCCATCCAGAAGAAATGAGAGCAATAGGAAAGAAAATGAAACTCCAAGAAGACGTTCTCATTCCCCCAGC
CCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAATCCGTCGCTCTCGAAGTCCAGTCCGTTATATCT
ATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCAGATCCAGGTC
CAGATCCAGGTCCCGTTCTCCATATCGTAGTCGGAATCTCCTTAGAAGAAGTCCGAAGTCCTATCGGTCA
GCTAGCCCAGAGAGGACATCAAGAAAATCAGTGAGATCAGATAGGAAAAAGGCATTAGAAGATGGAGGAC
AACGTTCTGTGCATGGGACAGAAGTTACTAAACAGAAACATACTGAAACAGTTGATAAAGGGCTCTCACC
AGCACAAAAGCCAAAACTTGCCAGTGGAACAAAGCCATCAGCGAAATCTCTAAGCTCTGTAAAGAGTGAT
TCACATTTAGGAGCATATTCTGCTCACAAGTCTGAGAATCTGGAAGATGACACTTTACCAGAAGGTAAAC
AGGAGTCTGGTAAAAGTGCTTTGGCCCAGCGGAAGCCACAGAAGGATCAGTCTTTGAGTTCCAACTCAAT
TCTTCTTGTATCTGAACTTCCAGAGGATGGCTTTACTGAAGAAGATATTAGAAAAGCATTTCTGCCATTT
GGAAAAATTAGTGATGTTCTCCTTGTTCCTTGTAGAAATGAGGCTTACTTGGAAATGGAGCTTAGAAAAG
CAGTTACTTCAATCATGAAGTACATTGAAACAATGCCTCTTGTGATAAAAGGAAAAAGTGTGAAAGTATG
TGTTCCAGGAAAGAAAAAGCCACAGAACAAAGAAATGAAGAAGAAACCTTCAGATATTAAGAAATCATCT
GCATCTGCTTTAAAAAAAGAGACAGATGCTTCAAAAACCATGGAAACTGTCAGTTCAAGCTCTTCTGCCA
AATCTGGACAAATAAAGTCATCTACGGTCAAGGTGAACAAATGTGCAGCAAAATCTGGAAAGAAGTCTCT
AGAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTCCAATAAACCCGTGACTGTACCAGCAAACTCT
GAAATCAAGGCTAGTTCAGAAGACAAAGCCACTGGAAAGAGTGCTGAAGAAAGTCCTTCAGGTACTTTGG
AGGCCACAGAAAAGGAACCAGTGAACAAGGAATCGGAGGAAATGAGTGTAGTATTTATTTCTAATTTGCC
TAACAAAGGATATTCTACAGAAGAAATTTACAACTTAGCAAAACCATTTGGTGCTTTGAAGGACATTTTG
GTTTTATCATCTCATAAAAAGGCATATATAGAAATAAACAAAAAATCTGCAGATTCTATGGTAAAATTTT
ACACCTGCTTCCCAATATCCATGGATGGAAATCAGCTCTCCATAAGTATGGCTCCTGAGCATGTGGACTT
AAAAGATGAGGAAGCTCTCTTTACAACTTTGATTCAAGAAAATGACCCAGAGGCAAATATTGATAAAATT
TACAACCGATTTGTACATCTTGACAATTTACCTGAAGATGGACTTCAGTGTGTGCTTTGTGTTGGGCATC
AGTTTGGAAAAGTGGATCGCTATATGTTCATGAGTAACAAAAACAAGGTGATCCTTCAGTTAGAAAGTCC
TGAATCTGCTCTGTCAATGTACAATTTTTTGAAACAAAATCCACAAAACATAGGTGAGCACGTGTTGACC
TGCACTTTATCTCCAAAGACTGACTCAGAGGTTCAAAGGAAGAATGATCTGGAACTAGGAAAAGGAAGTA
CTTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAGTGAGGTACAAACAGCAGCTGATAGTTCCTC
TGTTAAACCTAGTGAGGTTGAAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAA
GAACTTGGTCCAGGAAGTGAAACTGTTACACAAAAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAG
CTAAAACGCCAATGAAGAGAGTTAGAATTGGGAAATCATCACCCTCACAAAAAGTGGCAGAACCAACAAA
AGGCGAAGAGGCCTTCCAAATGAGTGAAGGAGTTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAA
AAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAGATTTGGACT
TTCTTGTTCCGAAGGCTGGATTTTTCTGTCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGC
AAATCACTGCAAGAGCACACGTCATAAACAAAATACAGAGAAGTTCATGGCCAAGCAAAGAAAGGAAAAG
GAGCAGAATGAGACTGAAGAAAGAAGCTCTAGGTGA

Translation (1271 aa):
MSRPRFNPRGTFPLQRPRAPNPPGMRPPGPFVRPGSMGLPRFYPAGRARGIPHRFPGHGSYQNMGPQRMN
VQVTQHRTDPRLTKEKLDFPEAQQKKGKPHGSRWDDESHITPPVEVKQSSVTQVTEQSPKVQSRYTKESA
SSILASFGLSNEDLEELSRYPDEQLTPENMPLILRDIRMRKMSRRLPNLPSHSRNKETLSNETVSSNVID
YGHASKYGYTEDPLEVRIYDPEIPTDEVKNEFQPQQSISATVSTPNVICNSVFPGGDMFRQMDFPGESSS
QSFFPVESGTKMSGLHISGQSVLEPVKSISQSISQTVSQTTSQSLNPPSMNQVPFTFELDAVLRQQERIS
QKSVISSADAHGGPTESKKDYQSEADLPIRSPFGIVKASWLPKFTQAGAQKMKRLPTPSMMNDYYAASPR
IFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRNESNRKENETPRRRSHSPS
PRHSRRSSSGHRIRRSRSPVRYIYRPRSRSPRICHRFISKYRSRSRSRSRSRSPYRSRNLLRRSPKSYRS
ASPERTSRKSVRSDRKKALEDGGQRSVHGTEVTKQKHTETVDKGLSPAQKPKLASGTKPSAKSLSSVKSD
SHLGAYSAHKSENLEDDTLPEGKQESGKSALAQRKPQKDQSLSSNSILLVSELPEDGFTEEDIRKAFLPF
GKISDVLLVPCRNEAYLEMELRKAVTSIMKYIETMPLVIKGKSVKVCVPGKKKPQNKEMKKKPSDIKKSS
ASALKKETDASKTMETVSSSSSAKSGQIKSSTVKVNKCAAKSGKKSLEAKKSGNIKNKDSNKPVTVPANS
EIKASSEDKATGKSAEESPSGTLEATEKEPVNKESEEMSVVFISNLPNKGYSTEEIYNLAKPFGALKDIL
VLSSHKKAYIEINKKSADSMVKFYTCFPISMDGNQLSISMAPEHVDLKDEEALFTTLIQENDPEANIDKI
YNRFVHLDNLPEDGLQCVLCVGHQFGKVDRYMFMSNKNKVILQLESPESALSMYNFLKQNPQNIGEHVLT
CTLSPKTDSEVQRKNDLELGKGSTFSPDLKNSPVDESEVQTAADSSSVKPSEVEEETTSNIGTETSVHQE
ELGPGSETVTQKDLKTMPERHLAAKTPMKRVRIGKSSPSQKVAEPTKGEEAFQMSEGVDDAELKDSEPDE
KRRKTQDSSVGKSMTSDVPGDLDFLVPKAGFFCPICSLFYSGEKAMANHCKSTRHKQNTEKFMAKQRKEK
EQNETEERSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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