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Report for CCDS51897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51897.1 Public Mus musculus 6 Vmn2r19 23 108 98 CCDS HistoryNCBI Gene:232358Re-query CCDS DB by CCDS ID:51897.1Re-query CCDS DB by GeneID:232358See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073948.6 ENSMUSP00000073604.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073948.6Link to Ensembl Protein Viewer:ENSMUSP00000073604.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073948Re-query CCDS DB by Protein ID:ENSMUSP00000073604
Original member Current member NCBI NM_001104632.1 NP_001098102.1 Accepted alive Link to Nucleotide Sequence:NM_001104632.1Link to Protein Sequence:NP_001098102.1Re-query CCDS DB by Nucleotide ID:NM_001104632Re-query CCDS DB by Protein ID:NP_001098102Link to BLAST:NP_001098102.1

Chromosomal Locations for CCDS 51897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123308333 123308547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123309625 123309922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123315514 123316323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123329858 123330082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123331514 123331637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123335645 123336537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGAGATTACTCATTGCCTTCTCTCTCTGGATTATTCTCATTGTGTTCCAGGAACAAATGTCTTGTTTCT
CCTTAAGTATACCTGCTTCTCCTGGCTACTATCAAGATGGGGATTTTGTGATTGGAGGACTCTTCTCCCT
TAGAGTGATGATTAGACGCTTCATAAGTAAATTTAGCTTTAAAGATGCATTCTATTTATCAGAATTTCTT
TATGCGCATCTTACCAAACATTATCAACATATATTGGCAATGGTTTTTGCTACAGAAAAAATCAACAAGG
ACCCAAATATTCTGTTCAATATGTCCCTGGGATTCTATCTCTTCAATGTTGACTATCTTGAGATGAAGGC
CATGGAAAGTTCTATGGCTTTGATCTCAGGAGAGAGCCCCCCAATTCCTAACTACAGCTGCAGGCCTGAG
AAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACAGGAATATCAACTCAGATCTCCCGAGTTC
TAAGTCTCTACAACATCCCACAGATCAGCTATGCTCCTTTTGACCAGAGCCTTGGGACCAGAGTCCAGCT
TCAGTCTCCTTACCAGTTTCCTGTGTACACCACAGCTCTGTATCAGGGAATTATTCAACTGCTGCTATAC
TTCACTTGGGTCTGGGTTGCCCTGGTGGTTCCAGATGATATGAGGGGAGAATTCTTCCTTAGGGACATCA
CAGAGGAGATAAAGAACCAAGGAATTTGCGTTGCATTTGCAGAAAAAGTTCCAGAATTTCCTGCTAAAGA
CACAGTAAACAGGAAACGTTTTATGGAAAGATTCTCATTGACACGTGTTATCATTGCATTTGGTGACACA
TATTCTCTTCTGAGCTTTGTCGATATGATCATTCACTATGGTACTTTTCATAATGTCTGGATCACAACTT
CTGATTGGGATTTCACCACATTTCCTTTTCATCAACATAAAAGTCATATAATCTCTGTTAGAGGATTATC
ATTTTCTGTTCGCATGGATCAAGTACCGGGATTCAAGGATTTTCTCAGAGATGTTCAACCTAGAAAATAC
CCTCATGATATCTTTATCCAGGATGTGTGGTCCATCTTATTTGAATGTCCATATTTGTATTGGCAGAAAG
TCAGGGAACCAAGTAAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGTTTGGGATATGAA
TACCTCACCCTATAGCTCCAAAGTCCATGCTGCTGTGTATGCCATTGCCCAGGCACTCCATGAGGAGCTG
TCACTCAGAATGGCAGGAGACTCACTTGATAAAAGTGTACTCCGGGCTCCTCTCCCATGGAAGCTCCATC
CATTCTTACAAAAAGGCCGTTTTGGGAGAAGCACCAATGAGGAGAACGTTGGGAACAAGGAGGTTTCCGC
AACCAAGTTTGACATCTTAAATTACCATTCTCTGCCAAGCAGTACCAAATCTCAAGTAAAGGTTGGCGAG
TTTGTCTTTGAATCTCACACTGTTCAGCTTTTTTCACTAGATGAAAAACTCATAACTTGGGGTAAATATG
ACAAGGAGATTCCTTTTTCTGTTTGCAGTCAAAGTTGTCCACTTGGATATAGGAAAACACCTGTTGAAGG
GAAACCATTTTGTTGCTTTGATTGTCTGCCATGTGCAGATGGAGAGGTTGCAAATGAAACAGATATGGAT
CAATGTATCAAGTGTCCTGAAGATCAGTATCCAAATAAGCAGAAGAATTACTGTCTCCCTAAAATTACAA
CATATTTATCCCATGGAGATACTCTAGGAGCTGTTTTGGGGTCTGTGGCCATTAGTTTATCTATATTTTC
AGCTATGATTTTAGGATTATTTATCCACTATCGGGACACACCCATTGTTAGAGCAAATAACAGAAATCTC
AGTTATCTACTCCTAGTTTCTCTAATGCTCTGTTTCTTTTGCTCATTAATATTCATTGGCCAAACTAGAA
CAGTCACTTGTGTCTTGAGACAAATGATATTTGGGGTTGTATTTTCTGTCACCATTTCTGCTATCTTAGC
AAAAACCTTCATTGTGGTTGTTGCCTTCAATGCCATCAAACCAGGAAGCAGATTGCAAATGTGGATGGTG
ATCCGACTTTCATATGCTATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGG
GGACATATCCCCCTTTCCCTGATGTTGACATGCACTCAGAGTTTGGGCAAATCATCCTCTGGTGTAATGA
GGGGTCCACCTTTGCTTTCTATTTTGTTCTTGGGTACTTGAGCTTTCTGTCCAGTCTCAGCTTGCTTATT
GCTTTTCTGGCTAGAAGGCTACCTGACAGCTTCAATGAGGCAAAAACAATCACATTCAGCATGCTGGTTT
TCTGCAGTGTGTGGATTTCTTTTGTACCCACTTACCTGAGCTCCAAAGGCAAAACCATGGTAGCTGTGGA
AATTGTTTCCATTTTGGTGTCCAGTTCTATCTTACTGCTCTGTATATTTCTTCCCAAATGCTATGTGATC
CTACTGAGGTCAGGTGGCCATTCTAGAAAGAAGTTCTTTAAATGA

Translation (854 aa):
MRLLIAFSLWIILIVFQEQMSCFSLSIPASPGYYQDGDFVIGGLFSLRVMIRRFISKFSFKDAFYLSEFL
YAHLTKHYQHILAMVFATEKINKDPNILFNMSLGFYLFNVDYLEMKAMESSMALISGESPPIPNYSCRPE
KTDKLVAVIGGISTGISTQISRVLSLYNIPQISYAPFDQSLGTRVQLQSPYQFPVYTTALYQGIIQLLLY
FTWVWVALVVPDDMRGEFFLRDITEEIKNQGICVAFAEKVPEFPAKDTVNRKRFMERFSLTRVIIAFGDT
YSLLSFVDMIIHYGTFHNVWITTSDWDFTTFPFHQHKSHIISVRGLSFSVRMDQVPGFKDFLRDVQPRKY
PHDIFIQDVWSILFECPYLYWQKVREPSKCEPNGSLSTRPLHVWDMNTSPYSSKVHAAVYAIAQALHEEL
SLRMAGDSLDKSVLRAPLPWKLHPFLQKGRFGRSTNEENVGNKEVSATKFDILNYHSLPSSTKSQVKVGE
FVFESHTVQLFSLDEKLITWGKYDKEIPFSVCSQSCPLGYRKTPVEGKPFCCFDCLPCADGEVANETDMD
QCIKCPEDQYPNKQKNYCLPKITTYLSHGDTLGAVLGSVAISLSIFSAMILGLFIHYRDTPIVRANNRNL
SYLLLVSLMLCFFCSLIFIGQTRTVTCVLRQMIFGVVFSVTISAILAKTFIVVVAFNAIKPGSRLQMWMV
IRLSYAIVCCGSIIQVCICAVWLGTYPPFPDVDMHSEFGQIILWCNEGSTFAFYFVLGYLSFLSSLSLLI
AFLARRLPDSFNEAKTITFSMLVFCSVWISFVPTYLSSKGKTMVAVEIVSILVSSSILLLCIFLPKCYVI
LLRSGGHSRKKFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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