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Report for CCDS51903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51903.1 Public Mus musculus 6 Vmn2r25 23 108 98 CCDS HistoryNCBI Gene:545874Re-query CCDS DB by CCDS ID:51903.1Re-query CCDS DB by GeneID:545874See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162046.2 ENSMUSP00000124342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162046.2Link to Ensembl Protein Viewer:ENSMUSP00000124342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162046Re-query CCDS DB by Protein ID:ENSMUSP00000124342
Original member Current member NCBI NM_001104641.1 NP_001098111.1 Accepted alive Link to Nucleotide Sequence:NM_001104641.1Link to Protein Sequence:NP_001098111.1Re-query CCDS DB by Nucleotide ID:NM_001104641Re-query CCDS DB by Protein ID:NP_001098111Link to BLAST:NP_001098111.1

Chromosomal Locations for CCDS 51903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123822814 123823706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123825268 123825391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123828346 123828570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123839295 123840104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123851798 123852095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123852973 123853190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGAAATTACTCATTGCTTTCTCCCCCCTAGTTGTTCTCATTTTATTCCAGGAACATATTTCTTGTTACT
ACTTAACTAAATATGCTTCTTCTGGCTACTATCAAGATGCAGATTTTGTTATTGGAGGACTCTTTTCCCT
TAGAGTGACTGATGGAAATACATTTATAAGTAGATCTGGCATTGAAGATACAAGCCATATACCAGAATAT
GTTTTTGCGGATCTCATTAAACATTATCAGCACATTTTAGCAATGGTTTTTGCTATAGAAAAAATCAACA
AGGACCCAAATATTCTATTCAATAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGATGAA
GGCTGTGGAAGGTTCTATGGCTTTGCTCTCAGGAGAGAGCCCCCCAATTCCTAACTACAGCTGCAGGCCT
GAAAAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAG
TTCTAAGTCTCTACAAAGTCCCACAGATCAGCTATGCTCCTTTTGACCAGATTCTTGGGACCAGAGTCCA
GCTTCAGTCTCCTTATCAGTTTTCAATGCACACCGCAGCTCTGTATCAGGGAATTGTCCAACTGATGTTA
TACTTCACTTGGATCTGGGTTGGCCTGGTGGTTCCAGATGATATGAGGGGAGAACTCTATCTTAGGGATA
TTACCGAGGAGATGATCAGCCATGGAATTTGTGTTGCATTTGCAGAAAAGGTTACAGAATATTCTAGTAA
GAACACAGTAAACTGGAAACGTTTTATGGAACGATTCACTTTGACACCTGTTATCATTACTTTTGGAGAC
ACACATTCTCTTCTGCGAATTGTCTATTTTGTCATTTTTTATAATCTTTTAGGTAATGTCTGGATCACAA
CTTCTGATTGGTATATCACCACATTACCCTTTGAACAGAATTTAATTTATACACACTTTGGTGGAGGATT
ATCATTTTCATTTCACATGGATGAAATTCTGGGATTCAAGGATTTTCTCAGAAGTGTTCAACCTAGAAAA
TACCCTCATGATATCTTTATCCGGCATGTATGGTCAAGCTTATTTGGATGTCCACATTACTACCAACACA
GACTCTGGGATCTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGCTTGGGATAT
GAATACTTCACCTATGAGCTACAAAGTCCATGCTGCTGTGTATGCCATTGCCCAGGCACTCCATGAGGAG
CTGTCACTCAGAGTGGAAGGAGATTCATTTGATAAAGTTATACTCCAAGCTCCTCATCCATGGAAGCTCC
ATCCATTCCTACAAAAGGGCCAAGTTGGGAGAAGCACCAATGAGGAGTACAGTGTGAACAAGGAAGTTTC
AGCAATCAAGCTTGACATCTTTAATTACCAGTCTCTGCAGAGTGGTACTGAAGCTCATGTGAAGGTTGGC
GAATTTGTCTTTGAATCTCACAGTGTTCAGCATCTTTCACTAAATGATAAAATAATAACTTGGGGTGAGC
ACCACAATCAGACTCCTTTATCTGTTTGCAGTCAAAGTTGTCCACTTGGATTTAGCAAAACAGCTGTTGA
GGGGAAACCATTCTGTTGTTTTGATTGTGTCCCATGTCCAGATGGAGAAATTGCAAATAAAACAGATATG
CATCAATGTATTAAGTGTCCGGAAGATCAGTATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTA
TGGTATTTTTGGCCCATGAAGATCCACTGGGAACTGTTCTTGTCTCCTTGGCCATTAGTTTATCTGCCTT
TTCAGCTATGATTCTAGGATTATTTATCTGCTATCGAGAAACACCCATTGTCAGAGCAAATAACAGAAAT
CTCAGTTATCTCCTCCTCATTTCTCTAAAGCTCTGTTTCTTTTGCTCACTAATATTCATTGGCCAACCTA
GAACAGTCACTTGTGTCTTGAGACAAATTATTTTTGGGATTGTATTTTCCATTGTCATTTCTGCTATCTT
GGCAAAGACCTTCATTGTGGTTGTGGCTTTCAAAGCCATCAAACCAGGAAGCATCTTAAAAATGGGGATG
GTGACCCGACTCTCAAATGCCATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGC
TGGGAACATATCCTCCTTTCCCTGATGTTGACATGCAGTCAGAGTTTGGGCAAGTCATCCTCTGGTGTAA
CGAGGGGTCCACCCTTGCTTTCTATTGTGTTCTGGGGTACTTGGGCTTTCTAGCCAGTCTCAGCTTGCTT
ATTGCTTTTCTGGCTAGAAGGCTACCTGACAGCTTCAATGAGGCAAAAACAATCACATTCAGCATGCTGG
GTTTCTGCAGTGTGTGGATTTCTTTCATACCCACTTACCTGAGCTCGAAGGGCAAAACCATGGTGGCCGT
GGAAATTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCAAATGCTATGTG
ATCCTACTGAAGTCAGGTGGTCATTCAAGAAAGAAGTTCTTTAAATGA

Translation (855 aa):
MKLLIAFSPLVVLILFQEHISCYYLTKYASSGYYQDADFVIGGLFSLRVTDGNTFISRSGIEDTSHIPEY
VFADLIKHYQHILAMVFAIEKINKDPNILFNKSLGFFLFNVNFIEMKAVEGSMALLSGESPPIPNYSCRP
EKTDKLVAVIGGISTSISIQISRVLSLYKVPQISYAPFDQILGTRVQLQSPYQFSMHTAALYQGIVQLML
YFTWIWVGLVVPDDMRGELYLRDITEEMISHGICVAFAEKVTEYSSKNTVNWKRFMERFTLTPVIITFGD
THSLLRIVYFVIFYNLLGNVWITTSDWYITTLPFEQNLIYTHFGGGLSFSFHMDEILGFKDFLRSVQPRK
YPHDIFIRHVWSSLFGCPHYYQHRLWDLSQCEPNGSLSTRPLHAWDMNTSPMSYKVHAAVYAIAQALHEE
LSLRVEGDSFDKVILQAPHPWKLHPFLQKGQVGRSTNEEYSVNKEVSAIKLDIFNYQSLQSGTEAHVKVG
EFVFESHSVQHLSLNDKIITWGEHHNQTPLSVCSQSCPLGFSKTAVEGKPFCCFDCVPCPDGEIANKTDM
HQCIKCPEDQYPNKQRNQCLPKIMVFLAHEDPLGTVLVSLAISLSAFSAMILGLFICYRETPIVRANNRN
LSYLLLISLKLCFFCSLIFIGQPRTVTCVLRQIIFGIVFSIVISAILAKTFIVVVAFKAIKPGSILKMGM
VTRLSNAIVCCGSIIQVCICAVWLGTYPPFPDVDMQSEFGQVILWCNEGSTLAFYCVLGYLGFLASLSLL
IAFLARRLPDSFNEAKTITFSMLGFCSVWISFIPTYLSSKGKTMVAVEILSILASSAGLLGCIFLPKCYV
ILLKSGGHSRKKFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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