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Report for CCDS52015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52015.1 Public Mus musculus 7 Zscan4f 23 108 98 CCDS HistoryNCBI Gene:665902Re-query CCDS DB by CCDS ID:52015.1Re-query CCDS DB by GeneID:665902See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145237.7 ENSMUSP00000120149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145237.7Link to Ensembl Protein Viewer:ENSMUSP00000120149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145237Re-query CCDS DB by Protein ID:ENSMUSP00000120149
Original member Current member NCBI NM_001110316.2 NP_001103786.2 Accepted alive Link to Nucleotide Sequence:NM_001110316.2Link to Protein Sequence:NP_001103786.2Re-query CCDS DB by Nucleotide ID:NM_001110316Re-query CCDS DB by Protein ID:NP_001103786Link to BLAST:NP_001103786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103786.2 506 Q3URS2 506 100% 0 0

Chromosomal Locations for CCDS 52015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 11398749 11399123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11400960 11401119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11401204 11402189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGCTTCACAGCAGGCACCAGCAAAAGACCTTCAGACCAACAATTTAGAGTTTACTCCAACTGATAGTT
CTGGTGTGCAGTGGGCAGAAGACATCTCTAACTCACCAAGTGCTCAGCTAAACTTTTCCCCAAGTAACAA
TGGCTGCTGGGCAACTCAGGAGCTGCAAAGTCTCTGGAAGATGTTCAACTCCTGGTTGCAGCCAGAAAAG
CAGACTAAGGAGCAGATGATTTCTCAACTGGTCTTGGAGCAGTTTCTCCTCACTGGGCACTGCAAGGACA
AGTATGCTTTGACTGAGAAGTGGAAAGCCAGTGGTAGCGATATGAGGAGATTCATGGAGAGTCTGACTGA
TGAGTGCTTGAAGCCTCCTGTCATGGTCCATGTTTCAATGCAAGGACAAGAAGCCCTCTTTTCTGAAAAC
ATGCCATTAAAAGAAGTCATCAAGCTTTTGAAACAACAGCAATCTGCAACAAGGCCAACACCAGATAATG
AGCAGATGCCAGTAGACACCACACAAGATAGATTATTGGCCACAGGACAAGAAAACAGTGAAAATGAATG
CAACAACTCTTGTAATGCTACTGAAGCAAATGTTGGTGAAAGCTGTAGTGGAAATGAAATGGACTCCCTT
CTTATTATGCAGAAAGAACAGCACCCTGAGCATGAAGAGGGGAATGTTGTTTGTCAATTCCCTCATGGTG
CCAGAAGAGCAAGTCAAGGCACCCCCAGTCATCATGTAGACTTCCCGAGTGCTCCGACTACTGCCGATGT
CCCCATGGAGGAACAACCAAAGGATTTATCCAGAGAAAACATCTCTGAGGACAAGAACAATTGCTATAAC
ACTTCCAGAAATGCAGCTACTCAAGTATATAGTGGTGATAATATTCCCAGGAACAAGTCAGACTCCCTTT
TCATTAACAAGAGAATATATCATCCTGAGCCTGAGGTGGGAGATATTCCTTATGGAGTTCCTCAGGATTC
TACAAGAGCAAGTCAAGGAACATCTACATGCCTGCAAGAGTCACTTGGGGAATGTTTTTCTGAAAAAGAC
CCTAGGGAGGTACCAGGGTTGCAGTCTAGGCAAGAGCAGCTTATCTCTGATCCTGTCCTTCTTGGTAAGA
ATCATGAGGCAAACTTACCATGTGAAAGTCATCAAAAGAGATTCTGTAGAGATGCCAAACTATACAAGTG
TGAAGAATGTTCTAGGATGTTCAAACATGCCAGGAGCCTTTCATCCCACCAGAGAACTCACCTGAATAAG
AAGAGTGAATTGCTTTGTGTCACCTGTCAGAAAATGTTCAAACGAGTCTCTGACCGCCGAACCCATGAGA
TCATACACATGCCAGAAAAGCCTTTCAAGTGCAGCACATGTGAAAAGTCCTTCAGCCACAAGACCAACCT
GAAGTCTCATGAGATGATTCACACAGGAGAAATGCCTTATGTCTGTTCCCTATGTAGCCGTCGCTTTCGC
CAATCATCCACTTACCATCGTCACCTGAGGAATTACCACAGATCTGACTGA

Translation (506 aa):
MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEK
QTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSEN
MPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSL
LIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYN
TSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKD
PREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNK
KSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFR
QSSTYHRHLRNYHRSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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