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Report for CCDS52068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52068.1 Public Mus musculus 7 Vmn1r94 23 108 98 CCDS HistoryNCBI Gene:620537Re-query CCDS DB by CCDS ID:52068.1Re-query CCDS DB by GeneID:620537See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164526.1 ENSMUSP00000127861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164526.1Link to Ensembl Protein Viewer:ENSMUSP00000127861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164526Re-query CCDS DB by Protein ID:ENSMUSP00000127861
Original member Current member NCBI NM_001166723.1 NP_001160195.1 Accepted alive Link to Nucleotide Sequence:NM_001166723.1Link to Protein Sequence:NP_001160195.1Re-query CCDS DB by Nucleotide ID:NM_001166723Re-query CCDS DB by Protein ID:NP_001160195Link to BLAST:NP_001160195.1

Chromosomal Locations for CCDS 52068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20167460 20168377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTCTGATCATGGTAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGCTCCTCTTGCTTTGCCAGT
TTGGGGTTGGTACCTTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAA
ACAGAGACCCAGACAGGTGATTTTAAGCCACATGGCTATGGCCAATGCCTTGACTCTATTCCTCACTATA
TTTCCAAACAACATGATAGCTTTTGCTCCAAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATTCT
TCAGTCACATGGTGGCAAGAAGCACAAATTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC
TCTTGTTCTTGTTAATAGAGGTAAACTTATACTCAGAGCTAGTGTCCCAAAATTTGTGAGTTATTCTTGT
TACAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCACAGATAA
CAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCATTGTCTT
CTTGCAGTTTGCCTATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTACTTCTC
CTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGA
CAAGAGCAACCCATACTATCCTGATGCTGGTGGTCATATTTGTTAGCTTTTATCTTCTAAATTTTATTTG
TATCATCTTTCATACCCTTTTAATGCATTCTCATCTCTTCATACGGCTTGTCAGTGAGGTTCTGGCTGCA
GTCTTCCCCAGTATCTGCCCCTTACTGTTGATCTTCAGAGATCCTAAAGATCCTTGTTCTGTGCTTTTCA
ACTGTTGA

Translation (305 aa):
MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTI
FPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSC
YSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLL
LHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAA
VFPSICPLLLIFRDPKDPCSVLFNC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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