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Report for CCDS52136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52136.1 Public Mus musculus 7 Vmn1r176 23 108 98 CCDS HistoryNCBI Gene:546943Re-query CCDS DB by CCDS ID:52136.1Re-query CCDS DB by GeneID:546943See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171073.1 ENSMUSP00000132168.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171073.1Link to Ensembl Protein Viewer:ENSMUSP00000132168.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171073Re-query CCDS DB by Protein ID:ENSMUSP00000132168
Original member Current member EBI ENSMUST00000227129.1 ENSMUSP00000153764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227129.1Link to Ensembl Protein Viewer:ENSMUSP00000153764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227129Re-query CCDS DB by Protein ID:ENSMUSP00000153764
Original member Current member EBI ENSMUST00000228280.1 ENSMUSP00000153851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228280.1Link to Ensembl Protein Viewer:ENSMUSP00000153851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228280Re-query CCDS DB by Protein ID:ENSMUSP00000153851
Original member Current member EBI ENSMUST00000228793.1 ENSMUSP00000153879.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228793.1Link to Ensembl Protein Viewer:ENSMUSP00000153879.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228793Re-query CCDS DB by Protein ID:ENSMUSP00000153879
Original member Current member EBI ENSMUST00000226767.1 ENSMUSP00000153990.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226767.1Link to Ensembl Protein Viewer:ENSMUSP00000153990.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226767Re-query CCDS DB by Protein ID:ENSMUSP00000153990
Original member Current member EBI ENSMUST00000227661.1 ENSMUSP00000154128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227661.1Link to Ensembl Protein Viewer:ENSMUSP00000154128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227661Re-query CCDS DB by Protein ID:ENSMUSP00000154128
Original member Current member EBI ENSMUST00000226319.1 ENSMUSP00000154663.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226319.1Link to Ensembl Protein Viewer:ENSMUSP00000154663.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226319Re-query CCDS DB by Protein ID:ENSMUSP00000154663
Original member Current member NCBI NM_001166721.1 NP_001160193.1 Accepted alive Link to Nucleotide Sequence:NM_001166721.1Link to Protein Sequence:NP_001160193.1Re-query CCDS DB by Nucleotide ID:NM_001166721Re-query CCDS DB by Protein ID:NP_001160193Link to BLAST:NP_001160193.1

Chromosomal Locations for CCDS 52136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23834812 23835726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTTGTCTCAGAATAAATCTGTGAAAACCACAGTGGAAGTGACTCTTCAGATCCTCTTGCTTTGCCAGG
TTGGGGTTGGAACTGTAGTCAACATTTTTCTGTTTGTCCATAATTTATCTCCATTCTTGAATGGATCTCA
ACAGAGACCCATAAAAGTCATTCTAGCCAACTTAGCTTTGGGCAATACCTTGATTCTCCTCTTTGCATTT
CCAAACAATATAAGAGTTTTTATTCCAAGGGAGTTCCCAACTGACCTAAAATGTAAACTTGGGTACTTCA
TTTGGCTGGTGGCTCGAAGTACAAACATGTGCTCCACCTGCTCTCTGAGCACTTATCAGTTTGTCACTCT
TGCTCCTGGTACCTGGGGTAGGGTGATGCTCCCTGGAAGAGCCCCCAATTTTTTGAGGTATACTTGTTAT
AGTTGTTGGTTGTTCAGTGTCTTAAATAATGCTCACATTCCAATGAAAGTCAGTGGTCCCCAGAAAACAC
ATAATGATAGCAATTCTAAAAGCAAGTGGGTTTGCTCCACCTCTGGTTTCAGTATAGGCATGCGCATCTT
GTCATTTGCCCATGATGCAGTGTTCATCAGCATCATCATCTGGAGCAGTGTCTCCATGGTGATTCTCCTG
AACAGACACCACCAAAGACTGCAGCATATTCAATCCACAAATCAGAAGCTCAGAGTTCATGCTGAGACTA
GAGCATCCCACACCATCCTGTTGCTGGTGGTCACATTTGTGACCTGTTATCTTCTAGACTGTATTTGTAC
AGTCTGTAACATTTCTTTTGTGGACTCTCGGGTCTGGTTGAGACGTGTCAAAGAAATTTTGTCCGTAAGC
TTCCCTACCTTTTCTCCATTACTGTTAATCTTTAGGGATCCTAAGGATCCTTGTTCTCTGCTATTCGGCT
GCTGA

Translation (304 aa):
MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAF
PNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCY
SCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILL
NRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVS
FPTFSPLLLIFRDPKDPCSLLFGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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