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Report for CCDS52173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52173.1 Public Mus musculus 7 Catsperg2 23 108 98 CCDS HistoryNCBI Gene:76718Re-query CCDS DB by CCDS ID:52173.1Re-query CCDS DB by GeneID:76718See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061193.3 ENSMUSP00000052285.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061193.3Link to Ensembl Protein Viewer:ENSMUSP00000052285.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061193Re-query CCDS DB by Protein ID:ENSMUSP00000052285
Original member Current member EBI ENSMUST00000209126.1 ENSMUSP00000147099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209126.1Link to Ensembl Protein Viewer:ENSMUSP00000147099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209126Re-query CCDS DB by Protein ID:ENSMUSP00000147099
Original member Current member NCBI NM_029714.4 NP_083990.2 Accepted alive Link to Nucleotide Sequence:NM_029714.4Link to Protein Sequence:NP_083990.2Re-query CCDS DB by Nucleotide ID:NM_029714Re-query CCDS DB by Protein ID:NP_083990Link to BLAST:NP_083990.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083990.2 1145 C6KI89 1145 100% 0 0

Chromosomal Locations for CCDS 52173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29697639 29697875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29697982 29698081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29698186 29698278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29700305 29700394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29700621 29700716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29700814 29700877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29701066 29701222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29704668 29704724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29704805 29704885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29705071 29705189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29705293 29705491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29705583 29705645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29706390 29706603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29709807 29709916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29710009 29710167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29710423 29710534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29711589 29711718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29711828 29711878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29712727 29712834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29712966 29713025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29714841 29714978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29716986 29717157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29719432 29719587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29721042 29721114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29721267 29721393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29721518 29721662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29725035 29725088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29725197 29725469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3438 nt):
ATGGTGTCCCGGCCAGCCATGTCCCCTGTCAGCCCTGTGTGGCCGAGAAAACCAAACCTTTGGGCATTCT
GGGTACTGCGGCTAGTGCTATTGCTGTCATTGAAGTCGTGGGCTGAAGATGCTTTACAGCATTGCACCTG
GCTTCTTGTCCTGAACAAGTTCGAGAAGGTAGGCTTGCATCTCTCCAAGGATCGATTTCAAGATCATGAG
CCCATCGATACAGTGGCCAAGGTGTTCCAAAAGTTGACAGACTCGCCAATCGATCCGTCAGAGAACTATT
TGAGCTTTCCTTACTACCTGCAAATCAACTTTTCCTGTCCGGGACAGAATATCGAGGAGCTGGCCCGAAA
GGGCCACCTGATGGGGATGAAGCCCATGGTCCAGATCAACTACATGTACTCAGTCAATTTCTACCGTTGG
GAGATGGAAAATGTACAGATTCTGATGGAGGCTGCTCCAATGCGCAGCACAGGGTACTGCCCGGCAGAGG
CCATGTGCGTCCTGAACTGGTACACACCCATGCCCTTTAAAAACGGCTCCGTGGTCTCCTCAGTGGACAT
CTATACCAATGGTATAGGGCCCTTCGTATCCAAGAAAAGGTTCTATGTGAATATGAATGGCTTCTTGAAG
AGAGATGCAAGTGGTAAATCCTTATTCGCCATAGGATATGAGAGCCTTGTTCTGAAGTCGAGTCACTTTA
GGCTTTCGAAATCAAGACCCCTGTGGTACACTGTGAACCATGCCCCCGTGTTCATCCTTGGGGGCTTTTA
TGATGAAAAGTCCATCCTGTTCTCAGATTCTAATTTCCAGGACTATGTTCTCTTGGAGCTGAGTATTGAC
AGTTGCTGGGTCGGCTCCTTCTACTGTCCCATTCTTGGCTTCTCAGCCACCATCCATGACGCCATTGCCA
CCGAGAGCACGCTCTTCATTCGACAGAACCAGCTTGTCTACTATTTCACAGGCACCTACATCACACTCTT
CGACAAAAGCCATGGCAGCAGCAGATGGGTTCGTGTCCTGCCTAGCGAGTGCATTAAGAGACTGTGCCCG
GTGTATGCCAGTGGCAATGGTTCTGAGTACGTCCTAGCCCTCACCACTGGCAAGAATGAGGGTTATATTC
ACATCGGGACCATCACAGATGGCCTCGTGTCCTTCGAGATGGTGCCAGATGGCTGGTCAGTATGTGAAAA
ATTACCAGGTAAAAACTGCAGCATCGACTGGGCTACATACATCGCTGATGAGAGGAACCTGCTGTTGTTA
GTGAAAATTGACTCTGGGCAATTTTACCTAGTCAACTTTAATACAGAGTTCAAGACTCTGAATATCCTCT
ACAAAATACCAGAGTTTATACCGGAAGCTAAGGAACTAGACTTCTTGGTGCTCCTTGATACAGTGACATA
CACCAACACTCCTATGACACCCAAGGGCTTGTTCTTCAACACATTGAACAACATGTTGTACATCTGGGGC
AACTTCATCCTGCAAAGCTACAATAGGGAAGAATTCATTTTTCTGGCAGACTTTCCCAAGGAGTCCACCA
TCAAATACATGGTCAACTCTTTCAAAGGACAAATGGCTGTTGTCACAGAAAATGAAGAGATCTGGTACTT
TCTGGAGGGTGGCTATGATGTATACCAGGTGGTCCCTTCCCAAGGCTGGGAAACCTACCATAACCTGCAG
AAGATGCAAAAGTCTTCCTTCCATTCAGAAGATGAGTCCTTGGTCTCCCTCTTCTTTGAGGATGGGAAGC
TTTTCCAGCTGGTCTATCTTTTTGACGTTGGAAAAGAACGTTTGGTCAAGAGGCTCCTGCCTGTGGGAAC
ACTGATGGAGTACAACCTGCCCAAACCCTTCACAGTGGTGAACCAAGGGAACTACCAGGCGATCTCCTTC
ACCCACACGTGCCCTTTCAAGGAGATTCATTTAATTGATGTGCCCAAAAAACATCATGCATCACGCACAG
AGAGCTATGTTGCTCTGCCACCTCTGGTCTCTGAATCCTTGGGCTTCCACAACAATAACACACTCGCTGT
CTATCAAGGCCTCGTCTATTACCTGCTGTGGCTGCACTCCAAGTATGATAAGCCCTATGCAGACCCAGTG
CACGATCCCACCTGGCGCTGGTGGCAACACAAAACAAAGGACAAGGATTACTTCTTTTACCTGTTCAGCA
ACCGGCTGGCGGCAGAAGGCATATACATCAACATGAACGCCTACCAAAAGCTCTACAACATGTCGGGTGA
CTATGGAATACCCGATCTTTTCTTCCTAGACAAGGGCAACTGGTTTACCATCACTGTGGTCTTATTGTCA
CATCAGGACACCTTCACAAGCTCTGATAGCCAAGGACCCACTATTAATGTGGATAAGAAGCTGGCAATTG
CTGTGACAATAGCGGATCCTGAGTGCCTTTCAGTAACTGTGACTCAGGATGTCCTTCTTAATCGCAACGC
AGTGATCAACAAGATTAAAGTCATAGATAAAAAGAGATGCTCTGAACAGGGCATGATTGGACGTAACATC
AAGAAGACTTCTATGATGCTCAAGGTCTTGGGCGCTCCTGGGAATTGCATCCAGCGCACGTACCTTGGGG
GAATTATTCAAGGTTTCAAAGTGGTACCAATATTCATCGGCTGTCCGCCTGGCAAGCGCTTGGCCTTTGA
TGTCTCCTACACGATTATGCATTCCGAGGAGATAAACAAGCACTATTTCGACTGTGTGATTAAAGACGCC
GAGATGCCATGCTTCCTCTTTCGCGACTTATTCCAGCCCTTCTTCTTAGTCCAAGACTTGGTGACTGGCG
ACTCTGGCAGTTTCTTGGGCAGTTATGTGCTGAAGGTGGTGGGTGGTGGTCGCACACTGAACACCATCAG
AGACTACACGGAGGAAGAAATCTTCCGTTACAACAGCCCGCTGGACACAACGAATAGCCTCATCTGGAAA
ACAAAGGTCGAAAGGACCACCGAGGACAAAAAGTTCTACATAATGTCCCATGAGAGCCCTGGAGTCGAGT
GGCTGTGCTTGGAGAACTCCCCTTGTTATGACATCATCCCCCAAAGCATCTACCCACCTGAGTTCTTCTT
CAAGTTGTTAGTGAGCAATAGAGGTGTAGACAATAGCACATACTGTGACTACAAGCTCACCTTTATAGTG
CACATCCATGGGCTACCGCTCAGCAGCAAGCGGACCTCCTTCATTGTTATGGTGTCTACCAGCTTCTTTA
TAGCCCTGGTTGTCTTCTACATCCTGTTCTGCCTCGTGTGGCCTCACATAGTGAAGGCCTGGGTCTCATT
ACGCTGGAGGATTAACAACATCATGGCGTCAGAGTCCTATTATACATATGCCTCCTCTACTGCGGGCTTC
AGCCTCCAGTCTCACAGTTTTGAGGGTCCCTCCAGAGCTGGTTCGAAAGAGGACAATGTTCAAGCTAAGA
CAGCATAG

Translation (1145 aa):
MVSRPAMSPVSPVWPRKPNLWAFWVLRLVLLLSLKSWAEDALQHCTWLLVLNKFEKVGLHLSKDRFQDHE
PIDTVAKVFQKLTDSPIDPSENYLSFPYYLQINFSCPGQNIEELARKGHLMGMKPMVQINYMYSVNFYRW
EMENVQILMEAAPMRSTGYCPAEAMCVLNWYTPMPFKNGSVVSSVDIYTNGIGPFVSKKRFYVNMNGFLK
RDASGKSLFAIGYESLVLKSSHFRLSKSRPLWYTVNHAPVFILGGFYDEKSILFSDSNFQDYVLLELSID
SCWVGSFYCPILGFSATIHDAIATESTLFIRQNQLVYYFTGTYITLFDKSHGSSRWVRVLPSECIKRLCP
VYASGNGSEYVLALTTGKNEGYIHIGTITDGLVSFEMVPDGWSVCEKLPGKNCSIDWATYIADERNLLLL
VKIDSGQFYLVNFNTEFKTLNILYKIPEFIPEAKELDFLVLLDTVTYTNTPMTPKGLFFNTLNNMLYIWG
NFILQSYNREEFIFLADFPKESTIKYMVNSFKGQMAVVTENEEIWYFLEGGYDVYQVVPSQGWETYHNLQ
KMQKSSFHSEDESLVSLFFEDGKLFQLVYLFDVGKERLVKRLLPVGTLMEYNLPKPFTVVNQGNYQAISF
THTCPFKEIHLIDVPKKHHASRTESYVALPPLVSESLGFHNNNTLAVYQGLVYYLLWLHSKYDKPYADPV
HDPTWRWWQHKTKDKDYFFYLFSNRLAAEGIYINMNAYQKLYNMSGDYGIPDLFFLDKGNWFTITVVLLS
HQDTFTSSDSQGPTINVDKKLAIAVTIADPECLSVTVTQDVLLNRNAVINKIKVIDKKRCSEQGMIGRNI
KKTSMMLKVLGAPGNCIQRTYLGGIIQGFKVVPIFIGCPPGKRLAFDVSYTIMHSEEINKHYFDCVIKDA
EMPCFLFRDLFQPFFLVQDLVTGDSGSFLGSYVLKVVGGGRTLNTIRDYTEEEIFRYNSPLDTTNSLIWK
TKVERTTEDKKFYIMSHESPGVEWLCLENSPCYDIIPQSIYPPEFFFKLLVSNRGVDNSTYCDYKLTFIV
HIHGLPLSSKRTSFIVMVSTSFFIALVVFYILFCLVWPHIVKAWVSLRWRINNIMASESYYTYASSTAGF
SLQSHSFEGPSRAGSKEDNVQAKTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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