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Report for CCDS52211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52211.1 Public Mus musculus 7 AW146154 23 108 98 CCDS HistoryNCBI Gene:101835Re-query CCDS DB by CCDS ID:52211.1Re-query CCDS DB by GeneID:101835See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098509.4 ENSMUSP00000096109.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098509.4Link to Ensembl Protein Viewer:ENSMUSP00000096109.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098509Re-query CCDS DB by Protein ID:ENSMUSP00000096109
Original member Current member NCBI NM_001033530.3 NP_001028702.1 Accepted alive Link to Nucleotide Sequence:NM_001033530.3Link to Protein Sequence:NP_001028702.1Re-query CCDS DB by Nucleotide ID:NM_001033530Re-query CCDS DB by Protein ID:NP_001028702Link to BLAST:NP_001028702.1

Chromosomal Locations for CCDS 52211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41480284 41481499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41482566 41482626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41482833 41482959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41499294 41499296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGAATGGAATGACCTATGATGATGTGCATGTAAACTTCACTGGCGAAGAGTGGGCTTTGCTCAGTCCTT
CCCAGAAGAGGCTCTACAAGGATGTAATGCTGGAAACCTACAGAAACCTCACTGCTATAGGTTGCAGTTG
GGAAAACCGTAATATTGAAGAATATTTTCAACGTTCTAGAAGATATGGAAGGCATGAAAGAAGTCATACT
GGAGAAAAACCTTCTGTATATACTCAATGTAATAAAGCATTTGCATATCAGAGTCATCCTCAAAGACATC
ATCGCATTCATACTGGAGAGAAACCCTATGAAGGTATTCAACATGATAAAGCCTTTGCACATCACAATCA
TCTTCCAAGGCGTGAAAGAATTCATGCTGGAGAGAAACCTTATAAATGCAATCAGTGTGGTAAATCCTTT
GCACACTGTAGTTACCTTCGAAAGCATAAAAGAATACATAGTGGAGAGAAACCCCATGAATGTAATCAAT
GTGGTAAAGCTTTTGCATGTCACAGTAATCTCCGAATACATAAAAGAACACATACTGGAGAGAAACCCTA
TGAATGTAACCAGTGTGGTCAAGCCTTTGCATGTCAAGGAAATCTCCGATTACATGAAAGAACACATACT
GGAGAGAAACCCTATGAATGCAATCAATGTGGTCAAGCCTTTGCATCTCACAGTCATCTCCAAATACATA
AAAGAACACATACTGGAGAGAAGCCCTACAAATGTAATCAATGTGATAAAGCCTTTTCACAAGGTAGTTC
ACTACAAATACATAAAAGAACACATACTAAAGAGAAACCCTATGAATGTAATCAATGTGGTAAAGCCTAT
ATATGTCACAGTAGTCTCCGAATACATAAAAGAACACATACTGGAGAGAAACCCTATGAATGTAATCAAT
GTGGTAAAGCCTTTGCAAGTCACAGTACTCTCCGTATACATAAAAGGACACATACAGCAGAGAAACCCTA
TGAATGTAATCAATGTGGTAAAGCCTTTACCCGGCACAATAGTCTCCAAATACATAAAAGAACACATACT
GGAGAGAAACCCTACAAATGTGATGAATGTGATAAAGCCTTTGCACAACAAGGTCATCTCAGAATACATA
AAAGAACACATACTGGAGAGAAACCTTATAAATGTAGTCAGTGTGATAAAGCTTTTGCACGTCATAGTCA
TCTTCAAATTCATGAAAGAATTCATACTGGAGAGAAACCTTACAGATGTAATCAATGTAATAAAGCCTTT
GCACAATATGGTAGTCTTCAAATACATAAAAGCACACATACTGCTGAAAAGCCCTACAAATGTAATGAAT
GTGGTAAAACTTTTTCACAACTCAGTTATCTCAAAATACATAAAAGAACACATAATAGAGAGAAACCCTA
TAAATAA

Translation (468 aa):
MNGMTYDDVHVNFTGEEWALLSPSQKRLYKDVMLETYRNLTAIGCSWENRNIEEYFQRSRRYGRHERSHT
GEKPSVYTQCNKAFAYQSHPQRHHRIHTGEKPYEGIQHDKAFAHHNHLPRRERIHAGEKPYKCNQCGKSF
AHCSYLRKHKRIHSGEKPHECNQCGKAFACHSNLRIHKRTHTGEKPYECNQCGQAFACQGNLRLHERTHT
GEKPYECNQCGQAFASHSHLQIHKRTHTGEKPYKCNQCDKAFSQGSSLQIHKRTHTKEKPYECNQCGKAY
ICHSSLRIHKRTHTGEKPYECNQCGKAFASHSTLRIHKRTHTAEKPYECNQCGKAFTRHNSLQIHKRTHT
GEKPYKCDECDKAFAQQGHLRIHKRTHTGEKPYKCSQCDKAFARHSHLQIHERIHTGEKPYRCNQCNKAF
AQYGSLQIHKSTHTAEKPYKCNECGKTFSQLSYLKIHKRTHNREKPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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