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Report for CCDS52253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52253.1 Public Mus musculus 7 Saal1 23 108 98 CCDS HistoryNCBI Gene:78935Re-query CCDS DB by CCDS ID:52253.1Re-query CCDS DB by GeneID:78935See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143082.3 ENSMUSP00000120658.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143082.3Link to Ensembl Protein Viewer:ENSMUSP00000120658.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143082Re-query CCDS DB by Protein ID:ENSMUSP00000120658
Original member NCBI NM_030233.1 NP_084509.1 Updated not alive Link to Nucleotide Sequence:NM_030233.1Link to Protein Sequence:NP_084509.1Re-query CCDS DB by Nucleotide ID:NM_030233Re-query CCDS DB by Protein ID:NP_084509
Current member NCBI NM_030233.2 NP_084509.1 Accepted alive Link to Nucleotide Sequence:NM_030233.2Link to Protein Sequence:NP_084509.1Re-query CCDS DB by Nucleotide ID:NM_030233Re-query CCDS DB by Protein ID:NP_084509Link to BLAST:NP_084509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084509.1 474 Q9D2C2-1 474 100% 0 0

Chromosomal Locations for CCDS 52253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46689363 46689455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46689803 46689895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46692779 46692975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46699364 46699552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46699636 46699718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46701781 46701961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46702402 46702517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46702621 46702680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46704014 46704093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46706993 46707076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46708864 46708977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46710498 46710632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGATCGAAACCCGTCTCCTCCGCCGCCTACCTGTGGTTCGGAGGATGAAGAGGACCTGGGTGGGGGAG
ACCGCATCGGGAGCACGGTCTACAGCAAGCACTGGCTCTTCGGCGTCCTCAGCGGGCTCATCCAGATTGT
CACACCTGAAAGTGGCACATCTGGCTCAGCTGATGAGGAAGAACAGGCAGATCTTGCTGAAGAAATGGAG
AATGAGATTTGCAGAGTCTGGGATATGTCCATGGACGAGGATGTGGCTTTATTTCTCCAAGAATTTAAGG
CTCCTGACATATTCATGGGAGTGCTGGCCAAATCCCCGTGTCCCCGATTAAGAGAAATCTGTGTGGGAAT
TTTAGGGAATATGGCTTGTTTCCGGGAGATATGCGAGTCCATCAGCAAGAACGAGGATCATGGGCAGGTG
CTGCTGCAGTGTTTGTGTGACTCAGACCCACCCACCCTGCTGGAAACTTGCAGGTTGTTGCTTACTTGCC
TTTCCCAGACAGAAGTGGCCAGTGTCTGGGTTAGAAGGATCCGGGAACACCCATCTGTCTACGCTAACGT
TTGCTTCATCATGTCCAGTTCAACAAACGTTGACTTGCTGGTGAAGGTCGGGGAGGTCGTGGACAAACTC
TTTGACTTAGATGAAAAACTCATGTTGGAATGGATTAGAAAGGGGGCTACCCGGCTTCCAGGCCAACCCC
ACGAGGACTCTGAAGAGCAGCCAGTGTTTTCCATTGTACCCTGTGTGCTGGAAGCTGCCAAACAAGTGCG
CTCTGAAAACCTGGAGGGGCTGGATGTTTACATGCGCATCTTACAGCTGCTCACCACGGTGGATGACGGC
GTGCAAGCCATCGTGCAGTGTCCTGATACTGGAAACGACACGTGGCGTTTACTCTTTGACCTGGTGTGCC
ATGAATTCTGCCAGCCTGATGACCCGCCTGTCATACTGCAGGAACAGAAGACAGTGCTAGCGTCTGTCTT
CTCAGTGCTGTCAGCCATCAGTGCCTCACGGGCCGAACAGGAGCACCTGAAGATAGAAGAAGGGGATCTT
CCTCTAATTGACAGCCTAATTCGGGTATTACAAAATATGGAACATTGTCAGAAGAAACCAGAGAACCCCT
CAGAGTCTGATACAGAAGAGCCTACGATCTGTGGTCCCACCCAAGACGACTTCCATATGAAGATCTTGAA
GGACATTTCATGTGAATTCCTTTCTAATATTTTTCAGGTGTTAACAAAGGAAAAGGTGGCTCAGGGACTG
AAGGAGGGCCAGTTAAGCAAGCAGAAGTGCTCCTGCGCCTTTCAGAGCCTCCTGCCCCTCTACGGCCCTG
CAGTGGAAGACTTCGTTAAAGTCGTACGTGAGGTCGATGAGGCTCTTGCTGATGACCTAGAAGACAGCTT
CCCAAGTGTGAAGGCACAGACTTAA

Translation (474 aa):
MDRNPSPPPPTCGSEDEEDLGGGDRIGSTVYSKHWLFGVLSGLIQIVTPESGTSGSADEEEQADLAEEME
NEICRVWDMSMDEDVALFLQEFKAPDIFMGVLAKSPCPRLREICVGILGNMACFREICESISKNEDHGQV
LLQCLCDSDPPTLLETCRLLLTCLSQTEVASVWVRRIREHPSVYANVCFIMSSSTNVDLLVKVGEVVDKL
FDLDEKLMLEWIRKGATRLPGQPHEDSEEQPVFSIVPCVLEAAKQVRSENLEGLDVYMRILQLLTTVDDG
VQAIVQCPDTGNDTWRLLFDLVCHEFCQPDDPPVILQEQKTVLASVFSVLSAISASRAEQEHLKIEEGDL
PLIDSLIRVLQNMEHCQKKPENPSESDTEEPTICGPTQDDFHMKILKDISCEFLSNIFQVLTKEKVAQGL
KEGQLSKQKCSCAFQSLLPLYGPAVEDFVKVVREVDEALADDLEDSFPSVKAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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