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Report for CCDS52280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52280.1 Public Mus musculus 7 Zfp710 23 108 98 CCDS HistoryNCBI Gene:209225Re-query CCDS DB by CCDS ID:52280.1Re-query CCDS DB by GeneID:209225See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049680.9 ENSMUSP00000050577.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049680.9Link to Ensembl Protein Viewer:ENSMUSP00000050577.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049680Re-query CCDS DB by Protein ID:ENSMUSP00000050577
Original member Current member EBI ENSMUST00000164056.8 ENSMUSP00000132361.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164056.8Link to Ensembl Protein Viewer:ENSMUSP00000132361.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164056Re-query CCDS DB by Protein ID:ENSMUSP00000132361
Original member NCBI NM_001145999.1 NP_001139471.1 Updated not alive Link to Nucleotide Sequence:NM_001145999.1Link to Protein Sequence:NP_001139471.1Re-query CCDS DB by Nucleotide ID:NM_001145999Re-query CCDS DB by Protein ID:NP_001139471
Current member NCBI NM_001145999.2 NP_001139471.1 Accepted alive Link to Nucleotide Sequence:NM_001145999.2Link to Protein Sequence:NP_001139471.1Re-query CCDS DB by Nucleotide ID:NM_001145999Re-query CCDS DB by Protein ID:NP_001139471Link to BLAST:NP_001139471.1
Original member NCBI NM_175433.5 NP_780642.3 Updated not alive Link to Nucleotide Sequence:NM_175433.5Link to Protein Sequence:NP_780642.3Re-query CCDS DB by Nucleotide ID:NM_175433Re-query CCDS DB by Protein ID:NP_780642
Current member NCBI NM_175433.6 NP_780642.3 Accepted alive Link to Nucleotide Sequence:NM_175433.6Link to Protein Sequence:NP_780642.3Re-query CCDS DB by Nucleotide ID:NM_175433Re-query CCDS DB by Protein ID:NP_780642Link to BLAST:NP_780642.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139471.1 666 Q3U288-1 666 100% 0 0
NP_780642.3 666 Q3U288-1 666 100% 0 0

Chromosomal Locations for CCDS 52280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80081077 80082540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80085951 80086142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80086434 80086608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80090335 80090504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGAGGGCTTCATGGACTCAGGGACACAGACCGACGCTGTGGTGGTGCTGTCCTTGGCTCAGGCGGCTG
TGCTGGGCCTGGTCTCAGAAAATGAGCTCTTCGGAGCCACCATAAGTGCTGAGGCCTTCTATCCAGACCT
AGGGCCAGAATTGACTGGGACAGCCATGGGGGAGCCAGGACCGCCAGGGCCGGACATCTATCAGCTGGCC
TGTAATGGACGAGCCCTGGAAGAGCCCCCGGAAGAGGAGGTGCTGGAGGTAGAGGCGGCCTTTGAGAAGC
ACACGCGGAGGAAGACACGGCCCCCTGTGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAGAAGAGGA
AGAGGAACAGGAGGTGTATGAGGTGTCTGTGCCTGGTGATGACAAAGACCCGGGCCCTGCAGAGGCCCCA
GCCGAGGTGGCCAGCAGCGGCTGCGAGGCCCTGGTGCAGAGCAGTGCCGTCAAGATGATCGACCTCAGCG
CCTTCAGCCGCAAGCCCCGGACACTCCGGCACTTGCCGAGAACTCCAAGGCCAGAGCTGGACATGGCCCC
ATTCGATCCTCCTTTCCCAGATCCAGCCCGGGATGGCTTCCCCGAGCCCAGCATGGCACTACCTGGACCA
GAGACTTTGCCCACTGAATGTAGTTTTGAGCCGCCCCACCTGGCCCCATTGAGCAATCCTGAGCCTCCCA
ACATGACATCGACGACAGAACTCGTCAAACCAGAGCAGGGCTTCGTGTGGCAGGAGTCCAGCGAGTTCGA
GGCTGACACGGCGGGTTCCACAGTGGAGCGCCACAAGAAGGCACAGCTGGACCGGCTGGACATCAATGTG
CAGATCGATGACTCCTACCTAGTGGAGGCGGGTGACCGCCAGAAACGCTGGCAGTGTCGCATGTGCGAGA
AGTCCTACACATCTAAGTATAACCTCGTGACGCACATCCTGGGCCACAACGGCATCAAGCCACACTCGTG
TCCCCACTGCAGCAAGCTCTTCAAGCAGCCTAGCCACCTGCAGACGCACCTGCTGACACACCAGGGCACG
AGGCCCCACAAGTGCCAGGTGTGCCACAAGGCCTTCACTCAGACCAGCCACCTCAAACGCCACATGCTGC
TGCACTCGGAGGTGAAGCCCTACAGCTGTCACTTCTGTGGCCGCGGCTTCGCCTACCCTAGCGAGCTCAA
GGCCCATGAGGTGAAGCACGAGAGTGGCCGCTGCCATGTCTGTGTCGAATGCGGCCTAGACTTCTCCACC
CTGACCCAGCTCAAGCGCCACCTGGCCTCCCACCAGGGCCCCACCCTCTACCAGTGCCTTGAGTGTGACA
AGTCCTTCCACTACCGCAGCCAGCTACAAAACCACATGCTCAAGCATCAGAATGTGCGGCCCTTCGTGTG
CACTGAGTGTGGCATGGAGTTCAGCCAGATCCATCACCTCAAGCAGCACTCTCTCACCCACAAGGGTGTG
AAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACATGAAGCGCCACATGCTGA
TCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAA
GACCCACATGATTGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAGGTGTGCGGGAAGTCCTTCAACCGC
ATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCA
GCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCT
GGACAGCCAAGACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCTGAACTTGACAACCATCAGGAGATG
GAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTG
AGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAG

Translation (666 aa):
MEGFMDSGTQTDAVVVLSLAQAAVLGLVSENELFGATISAEAFYPDLGPELTGTAMGEPGPPGPDIYQLA
CNGRALEEPPEEEVLEVEAAFEKHTRRKTRPPVRLVPKVKFEKAEEEEEQEVYEVSVPGDDKDPGPAEAP
AEVASSGCEALVQSSAVKMIDLSAFSRKPRTLRHLPRTPRPELDMAPFDPPFPDPARDGFPEPSMALPGP
ETLPTECSFEPPHLAPLSNPEPPNMTSTTELVKPEQGFVWQESSEFEADTAGSTVERHKKAQLDRLDINV
QIDDSYLVEAGDRQKRWQCRMCEKSYTSKYNLVTHILGHNGIKPHSCPHCSKLFKQPSHLQTHLLTHQGT
RPHKCQVCHKAFTQTSHLKRHMLLHSEVKPYSCHFCGRGFAYPSELKAHEVKHESGRCHVCVECGLDFST
LTQLKRHLASHQGPTLYQCLECDKSFHYRSQLQNHMLKHQNVRPFVCTECGMEFSQIHHLKQHSLTHKGV
KEFKCEVCGREFTLQANMKRHMLIHTSVRPYQCHICFKTFVQKQTLKTHMIVHSPVKPFKCKVCGKSFNR
MYNLLGHMHLHAGSKPFKCPYCSSKFNLKGNLSRHMKVKHGVMDISLDSQDPMMELAGPDPSELDNHQEM
EDFEENAYTYSSVDSSAEASTLTEQAMKEMAYYNVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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