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Report for CCDS52296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52296.1 Reviewed, update pending Mus musculus 7 Vmn2r74 23 108 98 CCDS HistoryNCBI Gene:546980Re-query CCDS DB by CCDS ID:52296.1Re-query CCDS DB by GeneID:546980See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166355.2 ENSMUSP00000126917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166355.2Link to Ensembl Protein Viewer:ENSMUSP00000126917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166355Re-query CCDS DB by Protein ID:ENSMUSP00000126917
Original member NCBI NM_001105187.1 NP_001098657.1 Removed not alive Link to Nucleotide Sequence:NM_001105187.1Link to Protein Sequence:NP_001098657.1Re-query CCDS DB by Nucleotide ID:NM_001105187Re-query CCDS DB by Protein ID:NP_001098657Link to BLAST:NP_001098657.1
Current member NCBI NM_001384912.1 NP_001371841.1 Pending alive Link to Nucleotide Sequence:NM_001384912.1Link to Protein Sequence:NP_001371841.1Re-query CCDS DB by Nucleotide ID:NM_001384912Re-query CCDS DB by Protein ID:NP_001371841Link to BLAST:NP_001371841.1

Chromosomal Locations for CCDS 52296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 85951867 85952783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85955551 85955674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85955918 85956145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85956844 85957650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85958028 85958316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85961286 85961482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTTCTTCTTGAACTCTGTCTTCTGGCTTCTGAAGATTTCTTTTAATTTTGGTCATTTGAGTGACCCCA
GATGCTTTTGGAGAATAAAAGACACTGAAAATAAACTAGGAGATAAAGAAACTTATTGTTTCTTTACTAT
TTCCACAAAACATGGTTATGTGAAGAATGATTATTTCCGTTGGAATCTAGACAAGAAGGTGACACCCAAG
ACCAGGCATTTGATTTTCTCTGTTTATCTTGCCTTGGAAGAAATAAATAAGAACTGCCATATTTTACCCA
ACATTTCTCTGGTAGTTAATATTGAGTGTGTCCTAGACAAACATGATGAGAAAACTGATTTTCTTTTTAA
AAGTGAAGATCTTATTCCTAATTACTACTGCAAAAATGAGAGAAGATATTTAATTGTACTTACAGCACCG
TTATGGGCAGTATCTTCAAGCATTGGGCCATACCTGTTCATGTCCAGAATTCCTGAGGTAAGTCAACTTT
ACTGTGGTCATTTTCATCTTCCTTTGAGTGATAATGAGCAATATCCTCATCTTCACCAGATATCTCGCAA
GGACACATTTCTACCACTAGCCATGGTGTCCTTAGTAGTTCATTTCAGATGGAACTGGATAGGAGTGATC
GTTACAAATGATGACCATGGAATTCAATTCCTTTCTGAATTTAGAGGAGAAATGCAAAACAAGATTGTCT
GTTTATCATTTGCTATTATTATCAAAACTGGAAAGTTCCTGGCTGTTACAGAGTTACATATGAATTATAA
GCAAATCTTAATGTCATCAGCCAAAGTTGTGATAGTTTATGGATACAGAGACTCGCCCATAATCTATGCC
TTCATTGTGTGGAAATCTCAAGACCTTTTCAGAATCTGGGTTAGCGTATCACAACTTGATATGATCACAT
TTCTAGGAGATTTCTTGCTATATGCGTCCACTGGGACTTTCATTTTTTCACACCAGAAACCCGAAATATC
TGGCTTTGAACAATTTATCCAAAGAATACACCCTTCAAACTACAGTAGTGAATTTTCCTTAGCTAAACAA
TGGTGGACATATTTTAGATGTTCTTTGCCACCATCTAATTGTAAGAAGCTCAAGAATTGTTCCACCAAAA
CTGTATTTAAATGGTTATTCATGACACCACTTGGATTAGCCATGAGTGATACATGCTATAACATATACAA
CGCTATGTATGCTGTGGCCCACTCACTCCATGGGATGCTTTTGCAACAAGTAGACACATGGTCAAAGAAT
GCTGGGAAAGAACTGGAATTTGACTCTTGGAAGATGTTCTCTATTCTGAAAACCTTAAAATTTGTAAATC
CTGCTGGAGATTTAGTCAACATGAACCAGAATTTGAAACAGGATGTAGAGTTTGATGTTTTCTATATCAT
GGATTTTCAAAAAGATTATGGACTTAAAATGAAAATAGGAAGATTTTCAGAGCATCTTCCAAGTGGTCAA
CAGATATATATGTCTAAAGAAATGATAGAGTGGGCTACAGATATTGATCAGATTCTACCCTCAATATGTA
CTATGCCTTGCAGACCAGGACTCAGAAAATCCCCTCAGGAAGGAAAGGACATCTGCTGTTTTGATTGTAA
ACCCTGCTCAGAAAATGAAGTTTCTAACATGACAAACATGGATCAGTGTGTGAAGTGTCCAGAAGATCAA
TATGCCAATGAAGACCATACAGTCTGCCTCCAAAAAGTTGTGACTATTTTAGATTATAGAGACCCTTTGG
GTAAAGCTCTGGCTGGTTTTGCTCTATGCTTCTCTGTCCTTACATCTCTTGTGTTGGTTGTCTTCCTGAA
ACATAGAGATACTCCCATAGTCAAAGCTAATAACCAAACTCTCAGCTTTGTCCTACTCATCTCGCTCATA
TTTTGTTTTATCTGTTCCTTGCTTTACATTGGTCATCCCACTATGGCCATCTGTATCCTGCAGCAGACCA
CATTTGCCATTGTGTTCACTGTGGCTACATCTACTATCTTGTCTAAGACAGTTATTGTAATACTGGCATT
CAAGATAACTGTCCCAGGAAGAAGAATGAGGTGGCTGCTTGAATCAGGCACACCCAAATACATCATTCCC
ATATGCACAATAATTCAGCTGATTCTTTGTGGAATTTGGCTGGGAACTTCTCCTCCATTTGTTGATGCTG
ATCTACATATGGTACATGGCCACATCCTTATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGT
CCTTGGATACATGGGCTCTGTTGCTCTAGCAAGTTTCACTGTAGCTTTCTTGGCCAGGAATCTGCCTGAT
ACATTCAATGAAGCCAAGCTCTTGACATTCAGCATGTTGGTGTTCTGTAGTGTCTGGATCACTTTCATCC
CTGTCTACCACAGCACCAAAGGAAAGACTATGGTTGCCGTGGAAGTTTTCTGTATCTTGGCTTCAAGTGC
AGGGCTGCTTCTTTGCATTTTTGCTCCAAAGTGCTATATTATTTTATTAAGACCACAGAAAAATTATTTT
TACAAGTTCAGGAAACGACGTGAGTTAAATTTAACCACCTAA

Translation (853 aa):
MFFLNSVFWLLKISFNFGHLSDPRCFWRIKDTENKLGDKETYCFFTISTKHGYVKNDYFRWNLDKKVTPK
TRHLIFSVYLALEEINKNCHILPNISLVVNIECVLDKHDEKTDFLFKSEDLIPNYYCKNERRYLIVLTAP
LWAVSSSIGPYLFMSRIPEVSQLYCGHFHLPLSDNEQYPHLHQISRKDTFLPLAMVSLVVHFRWNWIGVI
VTNDDHGIQFLSEFRGEMQNKIVCLSFAIIIKTGKFLAVTELHMNYKQILMSSAKVVIVYGYRDSPIIYA
FIVWKSQDLFRIWVSVSQLDMITFLGDFLLYASTGTFIFSHQKPEISGFEQFIQRIHPSNYSSEFSLAKQ
WWTYFRCSLPPSNCKKLKNCSTKTVFKWLFMTPLGLAMSDTCYNIYNAMYAVAHSLHGMLLQQVDTWSKN
AGKELEFDSWKMFSILKTLKFVNPAGDLVNMNQNLKQDVEFDVFYIMDFQKDYGLKMKIGRFSEHLPSGQ
QIYMSKEMIEWATDIDQILPSICTMPCRPGLRKSPQEGKDICCFDCKPCSENEVSNMTNMDQCVKCPEDQ
YANEDHTVCLQKVVTILDYRDPLGKALAGFALCFSVLTSLVLVVFLKHRDTPIVKANNQTLSFVLLISLI
FCFICSLLYIGHPTMAICILQQTTFAIVFTVATSTILSKTVIVILAFKITVPGRRMRWLLESGTPKYIIP
ICTIIQLILCGIWLGTSPPFVDADLHMVHGHILIVCNKGSVIAFYCVLGYMGSVALASFTVAFLARNLPD
TFNEAKLLTFSMLVFCSVWITFIPVYHSTKGKTMVAVEVFCILASSAGLLLCIFAPKCYIILLRPQKNYF
YKFRKRRELNLTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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