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Report for CCDS52301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52301.1 Public Mus musculus 7 Vmn2r77 23 108 98 CCDS HistoryNCBI Gene:546983Re-query CCDS DB by CCDS ID:52301.1Re-query CCDS DB by GeneID:546983See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164996.1 ENSMUSP00000129540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164996.1Link to Ensembl Protein Viewer:ENSMUSP00000129540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164996Re-query CCDS DB by Protein ID:ENSMUSP00000129540
Original member Current member NCBI NM_001105188.1 NP_001098658.1 Accepted alive Link to Nucleotide Sequence:NM_001105188.1Link to Protein Sequence:NP_001098658.1Re-query CCDS DB by Nucleotide ID:NM_001105188Re-query CCDS DB by Protein ID:NP_001098658Link to BLAST:NP_001098658.1

Chromosomal Locations for CCDS 52301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86795141 86795346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86800754 86801033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86801394 86802200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86802907 86803134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86803598 86803721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86811113 86812032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGGCAGAGATGTTCTCTTTGATTGTTTTCTTCTTGGTTCTGAAGCTTTCCTTTCTTTTTTGCTATTTGA
GCGACCCCAGGTGCTTTTGGAGAATAAAAGACAGAGAAAACTATCTAGGCGATAAAGAGGCTGATTGTTT
CTTTTCCATTTATACAAAGCGTGGTTATGTGAAGAATGATTACTTCAGTGAGAATCTAGACAAGAAAGTT
ACACTTAAGACCATCTACTTGATTTCCTCTGTTTATTTTGCCATTGAAGAAATTAATAGGAACATTCATA
TTTTGCCCAACATTTCCCTATTAGTTAAGATTGATTGTAACCTAATTGAGGATAATGTGGAAAGAGTTTG
GTCCTTGAAAAAAAAGGAAATTATTCCTAATTACTACTGTAAAAATCAGAGAAGATATTTAATTGTACTT
ACGGGGCCTATATGGATAACATCTTACATACTTGGACCATTTCTGTACTTCTCTAGAACTCCAGAGCTTT
ACTGTGGTTATTTTCATCTCCTTCTAAGTGACCAGGAACAGTTTCCTCATCTCTACCAGATGACTCCCAA
GGACACATCTCTACCATTAGCCATGGTGTCCCTAGCAGTTCACTTCAGATGGAACTGGGTAGGAGTCATC
ATTACAGATGATGACCATGGAATTCAGTTCCTTTCTGAACTGAGAACAGGAATGGAAAGAAACACTGTCT
GCTTAGCATTTGTCACTTCTATCACTTATGATAAGATGTTATACCTTAAAATGACTCATAAATATTATCA
CCAAATCATAATGTCATCAGCAAAAGTTGTCGTCGTCTATGGGGATAAAGAATCTCCTCTACAACTGAAC
TTCATGCTTTGGAAATCTATAAACATTCAGAGACTCTGGGTCAGTGTGTCACAATTTGATATGATCACAA
TGATGGGAGATTTCATGCTTAATTCCATTCATGGGACTCTTATTTTTTCACATCAACAGTCTGAGATGTC
TGGTTTTAAACACTTTATTCAGAGAGTGAACCCTTCTAACTACAGTAATGATATTTCTTTGGCTAAACTG
TGGTGGACTTACTTTAAGTGTTCATTGCCACCACCTGATTGTAAAACACTGAAGAATTGTCCAACCAAAA
CCCTATTTCAATGGTTTTTTGAGCCACCTCTTGGAATGTCTATGAGTGAAACATGTTACAACTTATACAA
TTCTGTGTATGCTGCTGCCCACTCAATTCATGAGATGCTTCTACAACATGTAGACACATCCTCAGAGAAT
GATGAAAATGTACTGGAATTTAACTCCTGGAAGATGTTCTCTTTTGTGAAGAACATACAATTTGTAAATC
CTGCTGGAGACCTAGTAAACATGAACCAGAATAGAAAACTGGATACAGAGTATGACATTTTCTACATCAC
GGATTTTCTAAAACACGAAGGACTTAAGATGAAAATAGGAAGATTTTCTGGTCATTTTCCAAATGGTCAA
CAACTGTTTATATCTGATGAAATGATAGAGTGGGCTACAGATATCAAGCAAACTCTAGCCTCCATATGTA
GTGTGCCTTGCAGACCAGGACTCAGAAAATACTTTCAGGAGGGAAACTCTGTCTGCTGTTTTGATTGTTA
CCCCTGCCCAGAAAATGAAATTTCCAACATGACAGACATGGATCAATGTGTGAAGTGTCCAGAGGATGAG
TATGCCAACACAAATCAAACTAAGTGCTTCAAAAAAGTCGTGACCTTTCTAGCTTATGAAGACCCTTCGG
GAATGGCTCTGGCTGTCTTGGCTGTGTGCTTCTCTGTTCTTACAAGTGTTGTACTCTGTGTCTTCTTGAA
ACACAGAAACACTCCCATAGTCAAGGCCAATAATGAAACTCTCAGCTATGTCCTACTCACCTCCCTCATA
TTTTGTTTTATCTGTTCCTTGCTCTACATTGGTTATCCCACTATGGTTAGCTGCATCCTGCAACAGACCA
CATTTGCCATTGTGTTCACTGTGGCTGCCTCTTGTGTCTTAGCCAAAACAATTACTGTAGTCCTAGCATT
TAAGATCACTGTTCCAGGAAGAAGACTGAGGTGGCTGCTACTTTCCGGAGCACCTAATTACATCATTCCC
ATATGCACCATGATCCAAATGATTCTCTGTGGAATCTGGCTGGGAACTTCTCCTCCATTTGTTGATGCTG
ATCTACACATGGTACATGGACACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCTTTTTACTGTGT
CCTTGGATACATGGGCTCTCTTGCTCTATCAAGTTTCACTGTAGCTTTCCTGGCCAGGAATCTGCCTGAC
ACTTTCAATGAAGCCAAGCTCCTGACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCC
CTGTCTACCACAGCACTAAGGGTAAGGCTATGGTTGCTGTGGAGGTCTTCTGTATCTTAGCCTCCAGTGC
AGGGATGCTTGTTTGTATATTTCTCCCAAAGTGCTACATTATTCTGTTGAGACCACAAATAAATTCTTTT
CATGATTTTAGGAAAATACATGTAAAAGTTATAAATATTAATTGA

Translation (854 aa):
MAEMFSLIVFFLVLKLSFLFCYLSDPRCFWRIKDRENYLGDKEADCFFSIYTKRGYVKNDYFSENLDKKV
TLKTIYLISSVYFAIEEINRNIHILPNISLLVKIDCNLIEDNVERVWSLKKKEIIPNYYCKNQRRYLIVL
TGPIWITSYILGPFLYFSRTPELYCGYFHLLLSDQEQFPHLYQMTPKDTSLPLAMVSLAVHFRWNWVGVI
ITDDDHGIQFLSELRTGMERNTVCLAFVTSITYDKMLYLKMTHKYYHQIIMSSAKVVVVYGDKESPLQLN
FMLWKSINIQRLWVSVSQFDMITMMGDFMLNSIHGTLIFSHQQSEMSGFKHFIQRVNPSNYSNDISLAKL
WWTYFKCSLPPPDCKTLKNCPTKTLFQWFFEPPLGMSMSETCYNLYNSVYAAAHSIHEMLLQHVDTSSEN
DENVLEFNSWKMFSFVKNIQFVNPAGDLVNMNQNRKLDTEYDIFYITDFLKHEGLKMKIGRFSGHFPNGQ
QLFISDEMIEWATDIKQTLASICSVPCRPGLRKYFQEGNSVCCFDCYPCPENEISNMTDMDQCVKCPEDE
YANTNQTKCFKKVVTFLAYEDPSGMALAVLAVCFSVLTSVVLCVFLKHRNTPIVKANNETLSYVLLTSLI
FCFICSLLYIGYPTMVSCILQQTTFAIVFTVAASCVLAKTITVVLAFKITVPGRRLRWLLLSGAPNYIIP
ICTMIQMILCGIWLGTSPPFVDADLHMVHGHIIIVCNKGSVIAFYCVLGYMGSLALSSFTVAFLARNLPD
TFNEAKLLTFSMLVFCSVWITFLPVYHSTKGKAMVAVEVFCILASSAGMLVCIFLPKCYIILLRPQINSF
HDFRKIHVKVININ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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