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Report for CCDS52302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52302.1 Public Mus musculus 7 Vmn2r78 23 108 98 CCDS HistoryNCBI Gene:637896Re-query CCDS DB by CCDS ID:52302.1Re-query CCDS DB by GeneID:637896See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170835.3 ENSMUSP00000126698.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170835.3Link to Ensembl Protein Viewer:ENSMUSP00000126698.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170835Re-query CCDS DB by Protein ID:ENSMUSP00000126698
Original member Current member NCBI NM_001105189.1 NP_001098659.1 Accepted alive Link to Nucleotide Sequence:NM_001105189.1Link to Protein Sequence:NP_001098659.1Re-query CCDS DB by Nucleotide ID:NM_001105189Re-query CCDS DB by Protein ID:NP_001098659Link to BLAST:NP_001098659.1

Chromosomal Locations for CCDS 52302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86915349 86915545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86920098 86920377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86920753 86921559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86922268 86922495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86922945 86923068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86954252 86955177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTTTTCTTTGATTGTCGTCTTCTTGCTTCTGAAGCTTTCCTTTCTTTTTTGCAGTTTAAGTGACCCCA
GGTGCTTTTGGAGAATAAAAGACAGAGAAAATGATCTAGGAGATAAGGAGACTGATTGTTTCTTTTCCAT
TTATACAAAGCGTGGTTATGTGAAGAATGATTACTTCAGTGAGAATCTAGACAAGAAGGTGACCCTTAAG
ACCATCCACTTGATTTCCTCTGTTTATTTTGCTGCTGAAGAAATCAATAAGAACATTTATATTCTACCTA
ACATTTCCCTAATAGTTAAGATTGAATGTAACCTAATTGCGGATAATGTGAAAAGAATTTGGTCCTTGAA
AAAAAAGGAAATTATTCCTAATTACTACTGTAAAAATCAGAGACGGTATTTAATTGTACTGACTGGACCT
ATATGGATAACATCTTACATACTTGGACCATTCCTGTACTTCTCCCAAACTCCAGAGCTTTACTGTGGTC
ATTTTCATTTTCTCCTAAATGACCAGGAACAGTTTCCTCATCTCTACCAGATGACTCCCAAGGACACATC
TCTACCACAAGGCATGGTGTCCCTAGCCGTTCACTTCAGATGGAACTGGGTAGGAGTCATCATTACAGAT
GATGACCATGGAATTCAGTTCCTTTCTGAACTGAGAACAGGAATGGAAAGTAACACTGTCTGCTTAGCAT
TTGTAACTATTATCACATACAATAGGATGTTATACCTTAAAATGTATCATAAATATTATCACCAAATCAC
AATGTCATCAGCAAAAGTTGTCATTGTCTATGGAGATAAAGAATCTCCTCTACAATTTAACTTCATACTA
TGGAAATCTGAAAACATTCAGAGACTTTGGGTCAGTGTGTCACAATTTGATATGATCACAGTGATAAGGG
ATTTCATGCTTAACTCCTTGCATGGAACTCTTATTTTTTCACATCAGCAGTCTGAGATATCTGGTTTTAA
ACAATTTATGCAGACAGTGCACCCATCTAACTACAGTAATGACATTTCTTTGGCTAAAATGTGGTGGACA
TACTTTAAGTGTTCTTTGAAACCACCTGATTGTAAAACACTGAAGAATTGTCCAACCAAAACCCTATTTA
AATGGTTTTTTGTACCACCTCTTGGAATGTCTATGAGTGAAACATGTTACAACTTATACAATTCTGTGTA
TGCTGTGGCCCACTCACTTCATGAGATGCTTCTGCAACAAGTAGACACATGCTCAGAGAATGATGGAACG
GTAATGGAATTTAATTCCTGGAAGATGTTCTATTTTCTGAAGACCATTCAATTTGTAAACCCTGCTGGAG
ACCTAATAAATATGAACCAGAATAGAGAACGGGATACAGAGTATGACATTTTCTATATCATGGATTTCCT
AAAACACGAAGGACTTAAAATGAAAATAGGAAGATTTTCTGGTCATTTTCCAAATGGTCAACAACTGTTT
ATGTCTGATGAAATGATAGAGTGGGCTACAGATATCAAGCAGACTCTAGCCTCCGCATGTAGTGTACCTT
GCAGACCAGGACTCAGAAAATACTTTCAGGAGGGAAAGGCCGTCTGCTGTTTTGATTGTTACCCCTGCCC
AGAAAACGAAATTTCCAACATGACAGACATGGATCAATGTGTGAAGTGTCCAGAGGATGAGTATGCCAAC
ACTGATCAAACTAACTGCCTCAAGAAAGTTGTGACCTTTCTGGATTACAAAGAACCCTTGGGAATGGCTC
TGGCTGTCTTGGCTGTGTTCTTTTCTTCTCTTACATTTATTATACTCTGTGTCTTCTTGAAACACCGAGA
CACTCCCATAGTCAAGGCCAATAATGAAACTCTCAGCTATGTCCTACTCACCTCCCTCATATTTTGTTTT
ATTTGTTCCTTGCTCTACATTGGTTATCCCACTATGGTTAGCTGCATCCTGCAACAGACCACATTTGCCC
TTGTGTTCACTGTGGCTGCCTCTTGTGTCTTAGCCAAGACAATTACTGTAGTCTTAGCATTTAAGATCAC
TGTTCCAGGAAGAAGACTGAGGTGGCTGCTACTTTCAGGGGCACCTAATTACATCATTCCCATATGCACC
ACAATACAAATGATTCTCTGTGGAATCTGGCTGGGAACTTCTCCTCCATTTGTTGATGCTGATCTACACA
TGATACATGAACACATCATCATTGTTTGCAACAAAGGTTCAGTGACTGCCTTCTACTGTGTCCTGGGATA
CATGGGCTCTCTTGCTCTTGCAAGTTTCACTGTGGCTTTCCTAGCCAGGAATCTCCCTGACACGTTCAAT
GAAGCCAAGCTCCTGACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGGTCACCTTCCTCCCTGTCTATC
ATAGCACTAAGGGCAAGGCTATGGTTGCTGTGGAGGTCTTCTGTATATTGGCCTCCAGTGCAGGGATGCT
TCTTTGCATATTTGTGCCAAAGTGCTACCTTATTTTGTTGAGACCACAAATAAATTCTTTTCATGAGTTT
AGGAAAATACATGCTAAATCTATAAATATTAACAGAATGTAA

Translation (853 aa):
MFSLIVVFLLLKLSFLFCSLSDPRCFWRIKDRENDLGDKETDCFFSIYTKRGYVKNDYFSENLDKKVTLK
TIHLISSVYFAAEEINKNIYILPNISLIVKIECNLIADNVKRIWSLKKKEIIPNYYCKNQRRYLIVLTGP
IWITSYILGPFLYFSQTPELYCGHFHFLLNDQEQFPHLYQMTPKDTSLPQGMVSLAVHFRWNWVGVIITD
DDHGIQFLSELRTGMESNTVCLAFVTIITYNRMLYLKMYHKYYHQITMSSAKVVIVYGDKESPLQFNFIL
WKSENIQRLWVSVSQFDMITVIRDFMLNSLHGTLIFSHQQSEISGFKQFMQTVHPSNYSNDISLAKMWWT
YFKCSLKPPDCKTLKNCPTKTLFKWFFVPPLGMSMSETCYNLYNSVYAVAHSLHEMLLQQVDTCSENDGT
VMEFNSWKMFYFLKTIQFVNPAGDLINMNQNRERDTEYDIFYIMDFLKHEGLKMKIGRFSGHFPNGQQLF
MSDEMIEWATDIKQTLASACSVPCRPGLRKYFQEGKAVCCFDCYPCPENEISNMTDMDQCVKCPEDEYAN
TDQTNCLKKVVTFLDYKEPLGMALAVLAVFFSSLTFIILCVFLKHRDTPIVKANNETLSYVLLTSLIFCF
ICSLLYIGYPTMVSCILQQTTFALVFTVAASCVLAKTITVVLAFKITVPGRRLRWLLLSGAPNYIIPICT
TIQMILCGIWLGTSPPFVDADLHMIHEHIIIVCNKGSVTAFYCVLGYMGSLALASFTVAFLARNLPDTFN
EAKLLTFSMLVFCSVWVTFLPVYHSTKGKAMVAVEVFCILASSAGMLLCIFVPKCYLILLRPQINSFHEF
RKIHAKSININRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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