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Report for CCDS52374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52374.1 Public Mus musculus 7 Tmc5 23 108 98 CCDS HistoryNCBI Gene:74424Re-query CCDS DB by CCDS ID:52374.1Re-query CCDS DB by GeneID:74424See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098088.10 ENSMUSP00000095694.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098088.10Link to Ensembl Protein Viewer:ENSMUSP00000095694.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098088Re-query CCDS DB by Protein ID:ENSMUSP00000095694
Original member Current member EBI ENSMUST00000121715.7 ENSMUSP00000112434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121715.7Link to Ensembl Protein Viewer:ENSMUSP00000112434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121715Re-query CCDS DB by Protein ID:ENSMUSP00000112434
Original member Current member EBI ENSMUST00000121744.8 ENSMUSP00000114137.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121744.8Link to Ensembl Protein Viewer:ENSMUSP00000114137.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121744Re-query CCDS DB by Protein ID:ENSMUSP00000114137
Original member Current member NCBI NM_001105252.1 NP_001098722.1 Accepted alive Link to Nucleotide Sequence:NM_001105252.1Link to Protein Sequence:NP_001098722.1Re-query CCDS DB by Nucleotide ID:NM_001105252Re-query CCDS DB by Protein ID:NP_001098722Link to BLAST:NP_001098722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098722.1 967 Q32NZ6-1 967 100% 0 0

Chromosomal Locations for CCDS 52374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118623079 118623818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118627154 118627257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118628753 118628842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118638129 118638228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118639920 118640007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118642208 118642456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118645272 118645423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118647798 118647942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118649442 118649597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118652510 118652661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118654917 118654995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118656759 118656856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118659538 118659630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118666535 118666610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118666827 118666960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118669167 118669340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118670659 118670737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118672175 118672279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118673423 118673465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118674617 118674663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2904 nt):
ATGTCTTCCTTCCACCAGAATAGCAGCTACATGGAGGATGCTGACTACCCTGGTTACTCAGGGTCTCGGA
ACCACACACACAACTATTTGGAAACTCAAGATTATCCGGAATTCCCAGGCTCTCAGAACAATCCAGGCTT
CCACCACCCCAGAAGCAACCCGCATTCTTCGGGCTCTAGAACAAACCCAGACTACCCCTACTTCCAAGAA
GAACCAGATTATCCTGGATCTCTGAGTAACACGGTCTATCAGGACACCAGGAGTCACCCGTTCTCTGCAC
ATTCCAGAACAAGGCCAGACTATGAGTCTTCAATTGAGCCAGACTATAATGACTTCAGGAGTGAATCTTA
CCACGCAGGTTTACCCATGGAGCCTGACTACCCTGGCTCTCAGAGCCATCCTGGTTTTGCAGGCGTCGGA
AGAAGCAGTATGAACTATACAGGCCCTAGAACCAATCTAGGCTATTTGGGATCTCTGGAAGAACCAGACT
ACCCTGGAGCTCAGGATAACTCTTATTATCATTCTGGCTCCAGACCCCATTCCAACCTGCCAGGCTCCAG
AAGAGATGCAGGTTATGCTGGGTCCAGAATCAATTCCTACCCAGATGATTTGGGGGAACCTGATTACCCA
GGTGCTGAGAATCAACCAAACTCTCCCCGTTTTTACGGAAAGCCAGACTATCCTGGTGCTGAAGAGGGTG
ATGGCTATAGCTCTTCCAAGTCCCTGGCAGTCATCAGGAGAGGGAATGGCCCCTTTGGCATGCTCGGCAG
GAGGAATGAAGATTACCCTGAAGGCATTGGAATGGTATCCATGGAGATGGCAGGTGATCCTAGAAATGGC
TATGTGAATCCTGCTTACACAAGAAGAATTAGTCCTGTCTGTCCAGATAGAAACCTATTGCTGTGCGCAC
ATGATTGGCACACATCAGTCCAAGGACAGAAACTAATTGCATCCCTGATTCCCATGACAACTAGAGACAG
AATCAAAACCATCAGGAACCAGCCAAGGACCATGCAAGAGAAGAGAGAGCTTAGAAAAATAGTTGACAAA
GAAAAAAACAAACAGTCACATGGCATCCTCGAGGCCAACTGCTGTGCTCAGTGTCTGGGCTCCCTTTCAC
TGACTTACCGCAGGACCAGGAACGGCCTTTCAGAGCTCCTCAATTACATCACCTTGTGGCAGAAGAGATT
CAAGGTCATCGGAGGCAAGTTTGGAACCAGCGTCCTGTCCTATTTCAGCTTCCTGAGGTGGCTTTTGAAG
TTCAACATCTTCTCATTCGTCATGAACTTCAGCTTCATCATCATCCCACAATTCACCGTGGGTGCAAAGA
ACACCCTCCAGTTCACTGGCTTGGAGTTTTTCACAGGGGCGGGTTATTTTGGGGACACGGTGATGTACTA
TGGGTTCTACACCAATTCTACAATCCGACATAGGATGGGTGGAGCATCCTACAACATGCAGCTGGCCTAC
ATCTTCACGATCGGAGCCTGCCTGGTCGTCTGTTTCTTCAGTCTACTCTTCAGTATGGCCAAGTACTTCC
GGAACAACTTCATCAACCCCCACATATACTCCAGAGGGATTGCTAAGCTCATCTTTTGCTGGGACTTCAC
TGTCACCCATGAAAAAGCTGTAAAGCTAAAACAGAAGAATCTGAGCACGGAGATCAGGGAGAACCTGTCT
GAGCTCCGCCAGGAGAACTACAGGCTCACATTCAACCAGCAGCTGACCCGATTTTCTGCTCACGTAGCCG
CTTGGCTCGTCTCTACTGGAGTGACCGCAGCCTGCTGTGTAGCTGTCTACTACTTGGCTGAGTATAACTC
TGAGTTCCTGAAGACTCACAGGAACCCTGGGGCGGTGTTGTTGCTGCCCTTTGTTGTGTCCTGCATCAAC
CTGGCCGTGCCTCGCTTCTACTCCATGTTCCGCCTGGTGGAGAGGTATGAGATACCAAGACAGGAAGTCT
ACGTCCTCTTGGTCCGAAACATCTTTTTGAAGATCTCCATTGTTGGAATTCTTTGTTACTATTGGCTCAA
CATCGTGGCCCTGTCTGGCGAAGAGTGCTGGGAGACCCTCATTGGCCAGGACATCTACCGGCTCCTTCTC
ATGGACTTCGTGTTCTCCTTGGCCGATTCCTTACTGGGGGAGTTTCTGAGGAGGCTCATTGGGATGAAGT
TCACCAGTCTCAGCCTACAGGAGTTTGACATTGCCAGGAATGTTCTAGAACTGATCTACGCACAAACTCT
GACCTGGCTTGGAATTTTCTTCTGCCCTTTGCTGCCTTTTATCCAAATGATCACTCTCTTCATTATGTTC
TATGTCAAAAACGTCAGCCTGATGATGAACTTCCAGCCCCCAAGCAAGGCCTGGCGGGCCTCACAGATGA
TAACTTTCTTCATTTTCTTGCTCTTCTTCCCATCCTTCACGGGAGTGCTGTGCACCCTGGCTATCACCAT
CTGGAGACTGAAACCTTCGGCTGACTGTGGCCCGTTCCGAGGTCTGCCTTCCTTCATCCAATCCATCTAC
AGCTGGATTGACACTCTGAGCCGCAGGCCTGGCTACCTGTGGGTCGTCTGGATCTACCAGAATCTCATTG
GAAGTGTGCACTTCTTCTTCATCCTCACCCTCATTGTGCTAATCATCACCTATCTTTACTGGCAGATCAC
AGAGGGGAGGAAGGTCATGATTCGATTGCTCCATGAACAGATCATTAATGAGGGCAAAGATAAGATGTTC
CTGATAGAGAAATTGACCAAACTACAGGATATGGAGAAGAGAGTCAACCCCAGTGCCCTTGACCTGGAAA
GGAGAGAGGTGGAGCCACAAATTCCTTTGCATTTGGAGGAACTTGGTGCTGCTCCTGACCTGCGATTGAG
GCGGTCAGCACAAGAGGAGAATCCCATAGCCTGA

Translation (967 aa):
MSSFHQNSSYMEDADYPGYSGSRNHTHNYLETQDYPEFPGSQNNPGFHHPRSNPHSSGSRTNPDYPYFQE
EPDYPGSLSNTVYQDTRSHPFSAHSRTRPDYESSIEPDYNDFRSESYHAGLPMEPDYPGSQSHPGFAGVG
RSSMNYTGPRTNLGYLGSLEEPDYPGAQDNSYYHSGSRPHSNLPGSRRDAGYAGSRINSYPDDLGEPDYP
GAENQPNSPRFYGKPDYPGAEEGDGYSSSKSLAVIRRGNGPFGMLGRRNEDYPEGIGMVSMEMAGDPRNG
YVNPAYTRRISPVCPDRNLLLCAHDWHTSVQGQKLIASLIPMTTRDRIKTIRNQPRTMQEKRELRKIVDK
EKNKQSHGILEANCCAQCLGSLSLTYRRTRNGLSELLNYITLWQKRFKVIGGKFGTSVLSYFSFLRWLLK
FNIFSFVMNFSFIIIPQFTVGAKNTLQFTGLEFFTGAGYFGDTVMYYGFYTNSTIRHRMGGASYNMQLAY
IFTIGACLVVCFFSLLFSMAKYFRNNFINPHIYSRGIAKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLS
ELRQENYRLTFNQQLTRFSAHVAAWLVSTGVTAACCVAVYYLAEYNSEFLKTHRNPGAVLLLPFVVSCIN
LAVPRFYSMFRLVERYEIPRQEVYVLLVRNIFLKISIVGILCYYWLNIVALSGEECWETLIGQDIYRLLL
MDFVFSLADSLLGEFLRRLIGMKFTSLSLQEFDIARNVLELIYAQTLTWLGIFFCPLLPFIQMITLFIMF
YVKNVSLMMNFQPPSKAWRASQMITFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPSFIQSIY
SWIDTLSRRPGYLWVVWIYQNLIGSVHFFFILTLIVLIITYLYWQITEGRKVMIRLLHEQIINEGKDKMF
LIEKLTKLQDMEKRVNPSALDLERREVEPQIPLHLEELGAAPDLRLRRSAQEENPIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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