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Report for CCDS52378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52378.1 Public Mus musculus 7 Pdilt 23 108 98 CCDS HistoryNCBI Gene:71830Re-query CCDS DB by CCDS ID:52378.1Re-query CCDS DB by GeneID:71830See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033267.3 ENSMUSP00000033267.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033267.3Link to Ensembl Protein Viewer:ENSMUSP00000033267.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033267Re-query CCDS DB by Protein ID:ENSMUSP00000033267
Original member Current member NCBI NM_027943.1 NP_082219.1 Accepted alive Link to Nucleotide Sequence:NM_027943.1Link to Protein Sequence:NP_082219.1Re-query CCDS DB by Nucleotide ID:NM_027943Re-query CCDS DB by Protein ID:NP_082219Link to BLAST:NP_082219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082219.1 588 Q9DAN1 588 100% 0 0

Chromosomal Locations for CCDS 52378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 119486724 119486993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119487929 119488018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119489370 119489548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119491649 119491769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119494920 119495117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119497958 119498083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119498163 119498273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119500372 119500509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119501593 119501726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119514874 119515080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119519632 119519824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGAACTGCTTTGGACACCTTTGCTGCTGGTGGCTGCTTGCCTCTCAGAGGTCCTTGGCTCACCAGAGA
TAGACACGGGCATCAACATTTCCCAGCCTTTGCACATCCTGGAGGATCATAACTTAATGGTGCTGACTCC
CGCAGGCTTGACGCAGACGCTGAATGAAACCCGCTTCCTAATGGTGATTTTCCACAACCCATCCTTAAAA
CAGTCCAGGAAGCTGGCCAAGGAGCTGGGCAAAGCCGCAGAGATCTTCGGGAAGGGCAAGAATGGCTTGG
GCTTTGGCAAAGTGGACATCACCAAGGAGACGGAACTTCAGCAGGAGTTTGACATCACCCATGCCCCGGA
ATTGAAGCTGTTCTTTGAGGGCAACAGGTTAAAGCCCATCAGCTGCAAAGATGTGGTTGAATCAACAGCT
TTGGTTGTTTGGTTGAGAAGACAAATTAGCAAGAAAGCACTTTTGTTCAACAACAGCGATGAAGTGGCCG
ATTTTGTGAAATCCAGGCCCTTGGTCATCGTTGGCTTCTTCCAGGATTTAGAGGAAGAAGTGGCAGAATT
ATTCTATGACACCATCAAGGACTTCCCAGAACTAACGTTTGGAGCGATACAAATAAAAAATTCTTTCGGG
CGATTCCATGTGATCCTTGACAGTGTCCTGGTGTTTAAAAAGGGAAAAATCGTGAAACGTCAAGAGCTTA
TTAATGACAGTACAAACAAAGACCATCTCAATCAAGTCATAAAGCAACAGCTCACAGGCTTTGTGATTGA
GTTAAACCCTGAGAATAAGGACCTGATTTATGAGCTGAACATCTTGAACCACATGCTGCTCTTTATCTCC
AAAAGCTCAGAGCCGTACAGCACCATAAGCCGGCATTACAGACAAATTGCAAAGGAATTCCAGAACAAGA
TTCTTTTCGTCCTGGTGAATGCGGATGAACCTAAAAACAAACGCATCTTTGAGTACTTCCAGATCTCAAG
AGTCAATGTCCCATCTGTTCAAATCCTGAACTTAAGCTCTGACGGCAGGTACAAAATGCCCACCGACGAC
ATAAACTTTGAAAGCCTCAAAAAGTTCTGCAACAGCTTCCTCAGCAAAACTGCCAAGAAACACAAAGCCA
GTGAAGAGATTCCAAAATATTGGGACCAAGGGCCAGTGAAGAAGCTCGTGGGGAAGAACTTCAATGTGGT
CGTCCTTGATAAGGAAAAGGACGTGTTTGTGATGTTCTATGCTCCCTGGTCTGAGAAATGCAGGGTGCTG
TTACCACTGCTGGAAGAGTTGGGCATAAAGTATCAAAACCACTCCACAGTCATCATTGCTAAGATTGACA
TAACGGCAAATGACATTCAGCTGGCAAACCCAGAACAGTACCCATTCTTCAGGCTTTTCCCTACTGACTC
ACAAGAGGCTGTCATGTATAAAGGAGAACACACCATGAAGGGCTTTTGTGACTTCCTGGAAAGCCATGTC
AAGGTTAGGATTGAGGAAGAAGATGAGCTATTGTACATTGAGCAAAATGAAGAGGAGGAGGTGTTAGCTG
AGCCAGAGATTCAGCTCATAGAGAAGTTGCCTGAGAATCCACTGCTCAAAATAGAGGACACAAGCAAACA
AGACAGGCCAGTGAAAGAGTCTCCTGTGCTGGACAGTATAAGAAAGCCAGAAGAGCCGGAGAGAAGGAAG
GAAACAGCTGAGAGGGAGGCGGCGGCAGCTCAGCCGAAGGAACAGCCAAAACCAGAGAGAAAACTGGAAG
TCAAAGAAGAACTTTAG

Translation (588 aa):
MELLWTPLLLVAACLSEVLGSPEIDTGINISQPLHILEDHNLMVLTPAGLTQTLNETRFLMVIFHNPSLK
QSRKLAKELGKAAEIFGKGKNGLGFGKVDITKETELQQEFDITHAPELKLFFEGNRLKPISCKDVVESTA
LVVWLRRQISKKALLFNNSDEVADFVKSRPLVIVGFFQDLEEEVAELFYDTIKDFPELTFGAIQIKNSFG
RFHVILDSVLVFKKGKIVKRQELINDSTNKDHLNQVIKQQLTGFVIELNPENKDLIYELNILNHMLLFIS
KSSEPYSTISRHYRQIAKEFQNKILFVLVNADEPKNKRIFEYFQISRVNVPSVQILNLSSDGRYKMPTDD
INFESLKKFCNSFLSKTAKKHKASEEIPKYWDQGPVKKLVGKNFNVVVLDKEKDVFVMFYAPWSEKCRVL
LPLLEELGIKYQNHSTVIIAKIDITANDIQLANPEQYPFFRLFPTDSQEAVMYKGEHTMKGFCDFLESHV
KVRIEEEDELLYIEQNEEEEVLAEPEIQLIEKLPENPLLKIEDTSKQDRPVKESPVLDSIRKPEEPERRK
ETAEREAAAAQPKEQPKPERKLEVKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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